Locus 3864

Sequence ID 2L_DroMel_CAF1
Location 11,314,483 – 11,314,601
Length 118
Max. P 0.972857
window6082

overview

Window 2

Location 11,314,483 – 11,314,601
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 93.82
Mean single sequence MFE -25.28
Consensus MFE -21.52
Energy contribution -21.19
Covariance contribution -0.33
Combinations/Pair 1.11
Mean z-score -2.55
Structure conservation index 0.85
SVM decision value 1.70
SVM RNA-class probability 0.972857
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11314483 118 + 22407834
UGCGGUCGGA-CGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAA-AAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUGCAGCGCCA
.......((.-((((((((((...((((.....((((((.((((((((.((.....))))))))-))........(((((((....)))))))....)))))))))))))))))))))). ( -27.00)
>DroVir_CAF1 32844 120 + 1
UGCGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAUACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA
(((((((.....(((((................((((.((((((((((.((.....)))))))))))).))))..(((((((....))))))).)))))))))))).............. ( -24.50)
>DroGri_CAF1 39843 120 + 1
UGCGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACGGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA
((((((((((...((((..((((((((.....))))))))((((((((.((.....)))))))))).)))).)))(((((((....)))))))......))))))).............. ( -22.10)
>DroEre_CAF1 36283 119 + 1
UGCGGUCGCA-CGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAACGCAGCGCCA
((((((((((-.(((((..((((((((.....))))))))((((((((.((.....)))))))))).))))))))(((((((....)))))))......))))))).............. ( -30.30)
>DroMoj_CAF1 47137 120 + 1
UGUGGUUGUCAUUUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA
(((((((.....(((((................((((...((((((((.((.....))))))))))...))))..(((((((....))))))).)))))))))))).............. ( -19.60)
>DroAna_CAF1 30899 119 + 1
UGCGGUUGUC-AGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGGCCGCAAUAAUGCAGCGCCA
.(((((((((-((((.......)))))((((((((((................))))))))))....))))))))(((((((....)))))))......(((((((....))).).))). ( -28.19)
>consensus
UGCGGUUGUC_UGUUGUAUUAAAAUUGUUAAUUGGUUUUGUUUUUAAUCUGUCAAUCAAUUAAAAAAACAACUGCGAUUUAAUUAAUUAAAUCAACAAAGACCGCAAUAAUCCAACACCA
(((((((........(((.........((((((((((................)))))))))).........)))(((((((....)))))))......))))))).............. (-21.52 = -21.19 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:14 2006