Locus 3863

Sequence ID 2L_DroMel_CAF1
Location 11,313,187 – 11,313,285
Length 98
Max. P 0.773213
window6081

overview

Window 1

Location 11,313,187 – 11,313,285
Length 98
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.40
Mean single sequence MFE -30.22
Consensus MFE -15.16
Energy contribution -14.97
Covariance contribution -0.19
Combinations/Pair 1.11
Mean z-score -2.17
Structure conservation index 0.50
SVM decision value 0.54
SVM RNA-class probability 0.773213
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11313187 98 + 22407834
--CGGGAUGCCGGGA----GGAUGACUGCGUUUU-GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UCUU
--.((((.(((((((----(((((.(((((((((-(((((...((((.(((....)))..)))))))))))))).)))).((....))))))))).)))))--)))) ( -36.60)
>DroVir_CAF1 31647 82 + 1
--------------------GCUGCCUGCGUUUU-G--GUUUCUGUUAGCGGAAAUGCAAAACAAGGCCAAACCGGCAGAUUUAUUGACAUCUUCGUUGGU--UGCU
--------------------((.((((..(((((-(--(((((((....))))))).)))))).))))..(((((((((((........))))..))))))--))). ( -27.90)
>DroPse_CAF1 45581 95 + 1
GG----------GGAUGGGGCAUGACUGCGUUUUUGGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGCU--CCGU
..----------..(((((((....((((..(((((((((...((((.(((....)))..)))))))))))))..)))).......(((......))))))--)))) ( -29.00)
>DroGri_CAF1 38630 81 + 1
--------------------ACUGCGUU-UUUCU-G--UUCUCUGUUAGCGGAAAUGCAGAACAAGGCCAAUGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UGUU
--------------------.(((((((-..(((-(--((.......))))))))))))).....(((((..((((.((((........))))))))))))--)... ( -23.80)
>DroSim_CAF1 32786 98 + 1
--CGGGAUGCCGGGA----GGAUGACUGCGUUUU-GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC--UCUU
--.((((.(((((((----(((((.(((((((((-(((((...((((.(((....)))..)))))))))))))).)))).((....))))))))).)))))--)))) ( -36.60)
>DroAna_CAF1 29761 88 + 1
------------AGA----GGAUGACUGCGUUUU-UGUC--UCUGUUAGCGGAAAUGCAAAACAAGGCCAGAACGGCAGAUUUAUUGACAUCUUCGUUGGCCGUCUU
------------...----....(((((((((((-(((.--.......)))))))))))......(((((..((((.((((........)))))))))))))))).. ( -27.40)
>consensus
____________GGA____GGAUGACUGCGUUUU_GGUCUCUCUGUUAGCGGAAAUGCAAAACAAGGCCAAAGCGGCAGAUUUAUUGACAUCUUCGUUGGC__UCUU
............................................(((((((((.((((((......(((.....))).......))).))).)))))))))...... (-15.16 = -14.97 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:13 2006