Locus 3861

Sequence ID 2L_DroMel_CAF1
Location 11,310,062 – 11,310,163
Length 101
Max. P 0.508895
window6079

overview

Window 9

Location 11,310,062 – 11,310,163
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 95.42
Mean single sequence MFE -33.90
Consensus MFE -27.16
Energy contribution -27.04
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.52
Structure conservation index 0.80
SVM decision value -0.05
SVM RNA-class probability 0.508895
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11310062 101 + 22407834
UGCACGUUAAUCAGCUCUUGCGGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACUCG
.((((......(((((((.((((...(..(((......)))..)..)))))))))))(((...(((((......))))).))).))))............. ( -33.40)
>DroSec_CAF1 29760 100 + 1
UGCACGUUAAUCAGCUCAUG-GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCAGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACGCG
.((..((.((((.(((((((-((...........))).))))))((((((((((...(((((....)))))..))))))....)))).)))).))...)). ( -33.30)
>DroSim_CAF1 29717 100 + 1
UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACGCG
.((..((.((((.(((((((-((...........))))).))))((((((((((.(.(((((....))))).)))))))....)))).)))).))...)). ( -34.80)
>DroEre_CAF1 31654 100 + 1
UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAUUGAGCCACCGUGGAGCUCGGAUCCGUGGAUCUGAUUCCACUUCUGGUUCGAUUUAUCACUCG
.....((((..(((((....-.)))))....))))..(((((((((..((((((.(((((((....)))))))))))))...))))))))).......... ( -37.20)
>DroYak_CAF1 29921 100 + 1
UGCACGUUAAUCAGCUCUUG-GGGCUGUCCAUAACCCAUUGAGCCGCCGUGGAGCUGGGAUUCGUGGAUCUGAUUCCACUUCUGGUUCGAUUCAUCACUCG
.....((((..(((((....-.)))))....))))..(((((((((..((((((.(.(((((....))))).)))))))...))))))))).......... ( -30.80)
>consensus
UGCACGUUAAUCAGCUCUUG_GGGCUGUCCAUAACCCAAUGAGCCACCGUGGAGCUGGGAUCCGUGGAUCUGAUUCCACUUCUGGUGCGAUUCAUCACUCG
.....((((..((((((....))))))....))))....((.((((..((((((.(.(((((....))))).)))))))...)))).))............ (-27.16 = -27.04 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:10 2006