| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,203,703 – 1,203,800 |
| Length | 97 |
| Max. P | 0.744527 |
| Location | 1,203,703 – 1,203,800 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 77.19 |
| Mean single sequence MFE | -19.27 |
| Consensus MFE | -12.40 |
| Energy contribution | -12.68 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744527 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1203703 97 + 22407834 AUAGG-----UCUCCAUUGAACCCUUUCAUCAUGCACUUUCCUCAUUGAGUUGGAAAGUGGAAACAAUCUUAUCAAAUGCGAUUGCU-AGCAAUCUUUUCUCU ..(((-----..((....))..)))........(((((((((..........))))))((....))...........)))(((((..-..)))))........ ( -18.40) >DroSec_CAF1 18055 102 + 1 AUAGGUAAUGUCUCCAUCGAACCCUUUCAUCAUGCACUUUCCCCAUUGAGUAGGAAAGUGGAAACAAUCUAAUCAAAUGCGAUUGCC-AGCAAUCUUUUCUCU .(((((..(((.(((...(((....))).......(((((((..........)))))))))).)))))))).........(((((..-..)))))........ ( -20.00) >DroSim_CAF1 20774 102 + 1 AUAGGUAAUGUCUCCAUCGAACCCUUUCAUCAUGCACUUCCCCCAUUGAGUUGGAAAGUGGAAACAAUCUAAUCAAUUGCGAUUGCC-AGCAAUCUUUUCUCU .(((((..(((.(((((....((..((((.................))))..))...))))).)))))))).........(((((..-..)))))........ ( -17.73) >DroEre_CAF1 19827 84 + 1 ----------------CUGAA-CCUUUCAUCUGGCACUUUCCCCAUUGAGUUGU-AAGUGGAAACAAUCGCAUCAAAUGCGAUUGCC-AGCAAUCUUUUCUCU ----------------.....-........(((((.......(((((.......-.)))))....((((((((...)))))))))))-))............. ( -20.80) >DroYak_CAF1 20715 91 + 1 AUA-----------CACUGAACCCUUUUAUCUUGCAUUUUCCCCAUUGAGUUGGAAAGUGGAAACAAUCUCAUCAAAUGCGAUUGCC-AGCAGUCUUUUCUCU ...-----------.((((............((.((((((((..........)))))))).)).(((((.(((...))).)))))..-..))))......... ( -15.60) >DroAna_CAF1 21449 81 + 1 ----------------AUGCACACUU------UGUGCAUUCGAUAUGGAGCUGGAAAGUGGAAACAAACUCAUCGAAUGCGAUUGCCUGGCAAUCUAUUCUCU ----------------..........------...(((((((((..(..(((....)))(....)...)..)))))))))((((((...))))))........ ( -23.10) >consensus AUA___________CAUUGAACCCUUUCAUCAUGCACUUUCCCCAUUGAGUUGGAAAGUGGAAACAAUCUCAUCAAAUGCGAUUGCC_AGCAAUCUUUUCUCU .................................(((((((((..........)))))))(....).............))((((((...))))))........ (-12.40 = -12.68 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:37 2006