Locus 3857

Sequence ID 2L_DroMel_CAF1
Location 11,302,514 – 11,302,622
Length 108
Max. P 0.998602
window6075

overview

Window 5

Location 11,302,514 – 11,302,622
Length 108
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 64.56
Mean single sequence MFE -24.41
Consensus MFE -12.85
Energy contribution -14.60
Covariance contribution 1.75
Combinations/Pair 1.12
Mean z-score -2.52
Structure conservation index 0.53
SVM decision value 3.16
SVM RNA-class probability 0.998602
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11302514 108 + 22407834
UUAAGGUAAGUUUUA-GUGGUUUGUUCUAUCAGUAGCAGACUAGUGCACUCGGGAAAAUAAGCACUAUCACUUAAAACUUAUAGCUUUAAUGCAGGACCUUCGAAAUUU
..(((((((((((((-(((((((((((.....).)))))))((((((..............)))))).))).))))))))...((......))...)))))........ ( -26.34)
>DroSec_CAF1 22142 89 + 1
UUAAGGUAAGUUUUA-GUGGUUUGUUCUAUCAGGAGCAGACUAGUGCACUCGUGAAAAUGAGAACUAUCACUUAAAACUUAAAAC-------------------AAAGU
....(.(((((((((-((((((((((((....)))))))))((((...(((((....))))).)))).))).)))))))))...)-------------------..... ( -28.60)
>DroSim_CAF1 22110 89 + 1
UUAAGGUAAGUUUUA-GUGGUGGGUUCUAUCAGGAGCAGACUAGUGCACUCGGGAAAAUGGGAACUAUCACUUAAAACUUAAAAC-------------------AAAGU
....(.(((((((((-((((((((((((....)))))...........((((......))))..))))))).)))))))))...)-------------------..... ( -23.30)
>DroYak_CAF1 22038 87 + 1
UUAAGGUAAGUUUUUACUGGUGUGUUCCC----GGGCAAAUGGG------------------AGGUAUCACUUAAAACUAAAAACUCUGCUGUCGCAACUGCCCAAAAU
....((((((((((....((((..(((((----(......))))------------------))....)))).))))))........(((....)))..))))...... ( -19.40)
>consensus
UUAAGGUAAGUUUUA_GUGGUGUGUUCUAUCAGGAGCAGACUAGUGCACUCGGGAAAAUGAGAACUAUCACUUAAAACUUAAAAC___________________AAAGU
......(((((((((.(((((((((((......)))))))).......((((......))))......))).)))))))))............................ (-12.85 = -14.60 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:06 2006