Locus 3856

Sequence ID 2L_DroMel_CAF1
Location 11,302,303 – 11,302,393
Length 90
Max. P 0.824622
window6074

overview

Window 4

Location 11,302,303 – 11,302,393
Length 90
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 80.25
Mean single sequence MFE -19.25
Consensus MFE -12.57
Energy contribution -13.16
Covariance contribution 0.58
Combinations/Pair 1.14
Mean z-score -1.93
Structure conservation index 0.65
SVM decision value 0.69
SVM RNA-class probability 0.824622
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11302303 90 + 22407834
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACCGCAUUCCA--CCCUUU
.......((((((((.....)))....)))))....((...((((......(((((...------------.)))))..(....)...))))...)--)..... ( -19.00)
>DroPse_CAF1 31767 95 + 1
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCC-------CCCUCCCCGUGCCCCCCGCACCCCA--CCCCGU
.......((((((((.....)))....)))))...................((((((.......-------........((((.....)))).)))--)))... ( -19.59)
>DroEre_CAF1 23846 90 + 1
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACCGAAUUCCA--CCCUUU
...((((((((((((.....)))....)))))...................(((((...------------.)))))..)))).............--...... ( -18.00)
>DroYak_CAF1 21777 92 + 1
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU------------CCACCCCCGAAACCACAGAAUUCCAUCCCCUUU
....(((((((((.......))))...(((.((........))))).....(((((...------------.))))).........)))))............. ( -19.50)
>DroAna_CAF1 20328 92 + 1
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCUGGCCAUCCCACCCCCGAG----------UCAA--CCCUCC
.......((((((((.....)))....)))))...................((((((((.....)))))))).......(((----------....--..))). ( -21.60)
>DroPer_CAF1 32136 84 + 1
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCUAUCCC-------CU-----------CCCCGCCCCCCG--CCCCGU
........(((..........((((..(((......)))...)))).....(((.(((......-------..-----------....))).))))--)).... ( -17.80)
>consensus
UAAUUUCUGGCACACUUCAAGUGCAAAUGCCAUUAAGUAAUAUGCAAACAAGGGUGGCU____________CCACCCCCGAAACCACCGCAUUCCA__CCCUUU
.......((((((((.....)))....)))))...................((((((..............))))))........................... (-12.57 = -13.16 +   0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:05 2006