Locus 3853

Sequence ID 2L_DroMel_CAF1
Location 11,290,593 – 11,290,689
Length 96
Max. P 0.676460
window6071

overview

Window 1

Location 11,290,593 – 11,290,689
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 91.62
Mean single sequence MFE -20.28
Consensus MFE -14.92
Energy contribution -15.28
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.99
Structure conservation index 0.74
SVM decision value 0.30
SVM RNA-class probability 0.676460
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11290593 96 + 22407834
AAUUAUGAUAAGUAGCUUCAUUAUUU-UUCUCUUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGUGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC
..((((((...((.(((((...((((-(.(((.......))).))))).....(((((.......))))))))))))))))))........-...... ( -20.80)
>DroSec_CAF1 10022 96 + 1
AAUUAUGAUAAGUAGCUUAAUUAUUU-UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC
..((((((...((.((((.((((..(-((...(((....)))..)))..))))((((((.....)))))).))))))))))))........-...... ( -18.80)
>DroSim_CAF1 9978 96 + 1
AAUUAUGAUAAGUAGCUUAAUUAUUU-UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC-CCAUAC
..((((((...((.((((.((((..(-((...(((....)))..)))..))))((((((.....)))))).))))))))))))........-...... ( -18.80)
>DroEre_CAF1 12357 95 + 1
AAUUAUGAUAAGUAGCUUAAUUAUUU-UGCUCCUCCUUUGUGCAA-CUUUAAUGAUCCUGCCAGAGGAACGGGAGACUCAUGACACCUCUC-CCAUAC
...........(.(((..........-.))).)(((((((.(((.-............))))))))))..((((((...........))))-)).... ( -21.22)
>DroYak_CAF1 9904 97 + 1
AAUUAUGAUAAGUAGCUUAAUUAUUUGUUCUCCUCCUUUGUGCAA-UUUUAAUGAUCCUGCCAGAGGAACGGGAGACUCAUGACACCUCACCCCAAAC
..(((((((((((((.....))))))).((((((((((((.((((-((.....)))..))))))))))...))))).))))))............... ( -21.80)
>consensus
AAUUAUGAUAAGUAGCUUAAUUAUUU_UUCUCCUCUUUUGAGCAAAAUUUAAUGAUCCUGCCAGAGGAUCGGAGCACUCAUGACACCUCUC_CCAUAC
..((((((.((((((.....))))))...(((((((((((.(((..(((....)))..))))))))))..))))...))))))............... (-14.92 = -15.28 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:02 2006