Locus 3847

Sequence ID 2L_DroMel_CAF1
Location 11,267,295 – 11,267,415
Length 120
Max. P 0.538562
window6059

overview

Window 9

Location 11,267,295 – 11,267,415
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.44
Mean single sequence MFE -33.59
Consensus MFE -23.70
Energy contribution -24.02
Covariance contribution 0.31
Combinations/Pair 1.37
Mean z-score -1.18
Structure conservation index 0.71
SVM decision value 0.01
SVM RNA-class probability 0.538562
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11267295 120 + 22407834
UAUCCAGGGAACCCAAAAUGUUUAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGCCUGCAUUUGAAGUGUGAAAAAACACUGGUUUUGGAAGGUGUGAGACCUUUGGAAAUUGGUCAAUUC
..((((((((..(((.........)))))))))))..((((.((..(((..((....))..)))(((((......)))))((((((.((((((.....)))))).)))))))).)))).. ( -32.50)
>DroSec_CAF1 99144 120 + 1
UAUCCAGGGAACCCAAAAUGUUUAUAGUCUUUGGAAUGUUGUCCCAUCGUUUGCCGGCAUUUGAAGUGGGAAAAAACUCUGGUUUUGGAAGGUGGGAGGCCUUUGGAAAUUGGCCAAUUC
..((((((((.................))))))))......(((((((((((.((.((.......)).))...))))(((......))).)))))))((((..(....)..))))..... ( -35.03)
>DroSim_CAF1 106115 120 + 1
UAUCCAGGGAACCUAAAAUGUUUAUAGUCUUCGGAAUGUUGUCCCAUCGUUUGCCGGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGAGGCCUUUGGAAAUUGGCCAAUUC
..((((..(((((..............((....)).((((.((((((((..((....))..)))..)))))...))))..)))))))))........((((..(....)..))))..... ( -33.10)
>DroEre_CAF1 101331 120 + 1
UAUUCAGGGAUCCCAAAAUGUUGAUGGUCUUAGGAACGUUGUCCCAUCGUUUGCCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGAGACGCCUUUGAAAAUUUGACAAGUC
..(((..(((((.(((....)))..)))))..)))..(((.((((((((..((....))..)))..)))))...))).(..(((((.(((((((...))))))).)))))..)....... ( -30.40)
>DroYak_CAF1 102891 120 + 1
UAUCUAGGGAUCCCAAAAUGUUGAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGGCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGACACCUUUGGAAAUUGGACAUGUC
..((((((((((.(((....)))..)))))))))).((((.((((((((..((....))..)))..)))))...))))(..(((((.(((((((...))))))).)))))..)....... ( -38.30)
>DroAna_CAF1 93113 118 + 1
AGGCCAACGAUUGCAGGAUAUUGAUCGUCUUUGGAGCCUUGUCCAGUCGACCGGAAAUAUGGGAAGUGGGGAAAAACGUGGGCUUCGGUAGAUGAGAGAGCUUCGAAAGGGGAGGAAG--
...((...............((..(((((((((((((((..(((...(..(((......)))...)...))).......))))))))).))))))..)).((((....)))).))...-- ( -32.20)
>consensus
UAUCCAGGGAACCCAAAAUGUUGAUGGUCUUUGGAAUGUUGUCCCAUCGUUUGCCAGCAUUUGAAGUGGGAAAAAACACUGGUUUUGGAAGGUGGGAGACCUUUGGAAAUUGGACAAGUC
..((((((((.((............))))))))))..(((.((((((((..((....))..)))..)))))...))).(..(((((.((((((.....)))))).)))))..)....... (-23.70 = -24.02 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:51 2006