Locus 3844

Sequence ID 2L_DroMel_CAF1
Location 11,253,401 – 11,253,495
Length 94
Max. P 0.986510
window6056

overview

Window 6

Location 11,253,401 – 11,253,495
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 88.98
Mean single sequence MFE -21.39
Consensus MFE -18.38
Energy contribution -18.13
Covariance contribution -0.25
Combinations/Pair 1.14
Mean z-score -3.00
Structure conservation index 0.86
SVM decision value 2.04
SVM RNA-class probability 0.986510
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11253401 94 - 22407834
GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCAUAAAUGUC
....(((-((.(((((((....))))).(((((((((((..((((.....................))))....))))))))))))).))))).. ( -20.80)
>DroSec_CAF1 85244 94 - 1
GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCUAAAAUGUC
....(((-(((.((((((....))))))(((((((((((..((((.....................))))....)))))))))))..)))))).. ( -20.80)
>DroSim_CAF1 86391 94 - 1
GUCUUAU-UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUUAUAAAUAUC
.......-....((((((....))))))(((((((((((..((((.....................))))....))))))))))).......... ( -20.50)
>DroEre_CAF1 87316 94 - 1
GACUUAU-UUUUGGCCACCUCUGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUCAUUUUUGCCAAUAAUUAUGCAUCAUAACUGUC
(((....-....((((((....))))))(((((((((((.((...........((((((......)))))))).))))))))))).......))) ( -23.70)
>DroYak_CAF1 88822 94 - 1
GUCUUAU-UUUUGGCCACCUCUGUGGCUGUGCAUAAUUAAUGAAAUAUGAAAUGCAAAACCUAAUUUUUCAUAAUAAUUAUGCAUCAUAAAUGUC
....(((-((.(((((((....))))).(((((((((((((((((.((...............)).))))))..))))))))))))).))))).. ( -22.06)
>DroAna_CAF1 79756 93 - 1
G--UAAUUUCCUAGUCCCUUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCGAAACUCAAUUUUCGCAAAUAAUUAUGCAUCGUAAAAAUU
.--.........((((.(....).))))((((((((((((((...)))....(((((((......)))))))..))))))))))).......... ( -20.50)
>consensus
GUCUUAU_UUUUGGCCACCUCGGUGGCUGUGCAUAAUUAAUGAAAUAUAAAAUGCAAAACCUAAUUUUUCCUAAUAAUUAUGCAUCAUAAAUGUC
............((((((....))))))(((((((((((.........(((((..........)))))......))))))))))).......... (-18.38 = -18.13 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:48 2006