Locus 3840

Sequence ID 2L_DroMel_CAF1
Location 11,235,965 – 11,236,085
Length 120
Max. P 0.660860
window6051

overview

Window 1

Location 11,235,965 – 11,236,085
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.88
Mean single sequence MFE -36.00
Consensus MFE -26.68
Energy contribution -27.97
Covariance contribution 1.28
Combinations/Pair 1.34
Mean z-score -1.14
Structure conservation index 0.74
SVM decision value 0.27
SVM RNA-class probability 0.660860
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11235965 120 - 22407834
UAUUAUGCCAUAACCUCACCUCAGCAGAUUCUCGACAUCAUCGCAGCGCACGUCGCGCAGGAUGACUAUCGGGUGCUCGCAGGGAUUGGCCUUGAGCAGCCGGCGGAAGUAGGGGCUGCA
......((((.....((.((((((((....(((((..(((((.(.((((.....)))).))))))...))))))))).).))))).)))).....((((((.((....))...)))))). ( -44.80)
>DroVir_CAF1 59771 108 - 1
------------UGCUCACCUUAGCAGGUUCUCAACAUCAUCGCUCCGUACAUCGCGCAAGAUGACAAUGGGAUGCUCACAAGGAUUGGCCUUGAGCAGCUUGCGAAAGUAUGGGCUGCA
------------.(((((.(((.(((((((((((...(((((....(((.....)))...)))))...)))))((((((..(((.....)))))))))))))))..)))..))))).... ( -35.20)
>DroGri_CAF1 92508 108 - 1
------------UGGUUACCUUAGCAGGUUCUCGACAUCGUCGCUGCGAACGUCGCGCAAGAUGACAAUGGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCUUGCGAAAGUAGGGACUGCA
------------.(((((((((.((..(((((((...(((((..((((.......)))).)))))...))))).))..))))))..)))))....(((((((((....)))))..)))). ( -39.30)
>DroWil_CAF1 95842 108 - 1
------------AACUUACCUCAAUAGAUUCUCCACAUCAUCGCUGCGUACAUCACGCAAUAUGACAAUGGGAUGCUCGCAGGGAUUUGCCUUGAGCAAUUUACGAAAAUAAGGACUACA
------------......(((...((..((((((.(((..(((.(((((.....)))))...)))..))))))((((((.(((......)))))))))......)))..)))))...... ( -24.70)
>DroMoj_CAF1 85984 108 - 1
------------UACUCACCUUAGCAGGUUCUCAACAUCGUCGCUGCGCACAUCGCGCAAUAUGACAAUGGGAUGCUCACAGGGAUUGGCCUUAAGCAGCUUGCGAAAGUAGGGACUGCA
------------...........((((..(((((...((((...(((((.....)))))..))))...)))))((((...(((......)))..)))).(((((....)))))..)))). ( -33.20)
>DroAna_CAF1 62847 120 - 1
UAUAGUCCAAUAUCCCUACCUCAGAAGAUUCUCAACAUCGUCGCUGCGCACAUCCCGCAGGAUAACGAUCGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCCGCCGGAAGUAGGGACUGCA
............(((((((.((.................(((.(((((.......))))))))..((..(((.((((((.(((......))))))))).))).)))).)))))))..... ( -38.80)
>consensus
____________UACUCACCUCAGCAGAUUCUCAACAUCAUCGCUGCGCACAUCGCGCAAGAUGACAAUGGGAUGCUCGCAGGGAUUGGCCUUGAGCAGCUUGCGAAAGUAGGGACUGCA
.......................((((..(((((...(((((...((((.....))))..)))))...)))))((((((.(((......))))))))).(((((....)))))..)))). (-26.68 = -27.97 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:43 2006