Locus 384

Sequence ID 2L_DroMel_CAF1
Location 1,200,979 – 1,201,085
Length 106
Max. P 0.803457
window607

overview

Window 7

Location 1,200,979 – 1,201,085
Length 106
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 80.17
Mean single sequence MFE -30.96
Consensus MFE -15.86
Energy contribution -17.66
Covariance contribution 1.80
Combinations/Pair 1.09
Mean z-score -2.20
Structure conservation index 0.51
SVM decision value 0.62
SVM RNA-class probability 0.803457
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1200979 106 + 22407834
CAUCCGAUUUACCACGAACCUCCUCACGG------AAACAGCUCCGGCUACAAUCCUCCGCCGCCGCAUGGUCCGUAUCCAUAUGGUCCAGGAUACGUGGCCCCAGGACCUC
..(((......(((((....(((....(.------...).((..((((...........))))..)).(((.(((((....))))).))))))..))))).....))).... ( -31.00)
>DroSim_CAF1 18062 106 + 1
CAUCCGAUUUACUACGAACCACCUCACGG------AAACAGCUCCGGCUACAAUCCUCCUCCGCCGCAUGGUCCAUAUCCACAUGGUCCAGGAUACGUGGCCCCAGGACCUC
..(((......................((------(......)))((((((.....((((..((((..(((.......)))..))))..))))...))))))...))).... ( -26.10)
>DroEre_CAF1 17222 106 + 1
CAUCCGAUUUAUUACGAGCCGCCUCACGG------AAACAUUUCCGGCUACCAUCCUCCGCCGCCGCAUGGUCCGUAUCCACAUGGGCCAGGUUACGUGGCCCGAGGACCUC
................(((((......(.------...).....)))))....(((((.(((((.((.((((((((......)))))))).))...)))))..))))).... ( -35.50)
>DroYak_CAF1 17928 106 + 1
CAUCCAAUCUACUAUGAACCCCCUCAUGG------AAACAGCUCCGGCUACAAUCCUCCACCACCACACGGUCCGUAUCCAUAUGGACCAGGAUAUGUGGCACCAGGACCUC
...........((((((......))))))------....((.(((.(((((((((((............((((((((....))))))))))))).))))))....))).)). ( -32.10)
>DroAna_CAF1 16828 109 + 1
CAUCCUAUUUAUUACGAGCCAGGACACGGCCCAGAAAGCGGACCGGGCUACAAUCCGCCUCCUCCUCACGGUCCUCAUC---ACCCACCAGGCUAUGUGGCCCCAGGACCAC
...............(((..((((..(((.((.......)).)))(((........))))))).)))..((((((....---..((((........))))....)))))).. ( -30.10)
>consensus
CAUCCGAUUUACUACGAACCACCUCACGG______AAACAGCUCCGGCUACAAUCCUCCGCCGCCGCAUGGUCCGUAUCCACAUGGACCAGGAUACGUGGCCCCAGGACCUC
..(((.............((.......))................((((((.(((((............(((((((......))))))))))))..))))))...))).... (-15.86 = -17.66 +   1.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:34 2006