Locus 3837

Sequence ID 2L_DroMel_CAF1
Location 11,224,846 – 11,224,949
Length 103
Max. P 0.500000
window6046

overview

Window 6

Location 11,224,846 – 11,224,949
Length 103
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.70
Mean single sequence MFE -22.78
Consensus MFE -15.50
Energy contribution -16.06
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -1.22
Structure conservation index 0.68
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11224846 103 + 22407834
GUGAGGUCAGCGAGUUGGGGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-UCUUCA---G--
...(((((.((((((((((.(((...)))....))))).))))).)))))((((....(((((((.(((................))).)))))))-.)))).---.-- ( -25.99)
>DroVir_CAF1 48589 79 + 1
-----------------AGAGGCGUUGGCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-------------
-----------------.((.(((((((.((((((((((((....)))))).))))))...))))))).)).........................------------- ( -16.40)
>DroPse_CAF1 113197 92 + 1
--------------GAGGGGGGCGUGGUCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUUUUCCUCA---GUU
--------------((((..(((..(((.((((((((((((....)))))).)))))).)))(((.(((................))).))).)))..)))).---... ( -24.89)
>DroMoj_CAF1 71761 89 + 1
-----------------AGAGGCGUUGGCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-G--UUGUUUUUU
-----------------.((.(((((((.((((((((((((....)))))).))))))...))))))).))..((((((..(((((......))))-)--..)))))). ( -19.10)
>DroAna_CAF1 52655 100 + 1
---GGGUCAGCUGUGGAGAGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU-UCUUCU---G--
---.((((((((.(....).))).)))))((((((((((((....)))))).))))))(((((((.(((................))).)))))))-......---.-- ( -25.39)
>DroPer_CAF1 76914 92 + 1
--------------GAGGGGGGCGUGGUCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUUUUCCUCA---GUU
--------------((((..(((..(((.((((((((((((....)))))).)))))).)))(((.(((................))).))).)))..)))).---... ( -24.89)
>consensus
______________G_GGGGGGCGUGGCCAUUACUCAAGUUUGUGGAUUUGAAGUAAUAACUCAGUGCGUCAUAAAAAUUUUAAUUGCUUUGGGUU_UC_UCA___G__
.................((((........((((((((((((....)))))).))))))(((((((.(((................))).)))))))..))))....... (-15.50 = -16.06 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:38 2006