Locus 3834

Sequence ID 2L_DroMel_CAF1
Location 11,201,458 – 11,201,550
Length 92
Max. P 0.664733
window6041

overview

Window 1

Location 11,201,458 – 11,201,550
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 83.81
Mean single sequence MFE -34.32
Consensus MFE -18.77
Energy contribution -19.05
Covariance contribution 0.28
Combinations/Pair 1.04
Mean z-score -3.35
Structure conservation index 0.55
SVM decision value 0.28
SVM RNA-class probability 0.664733
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11201458 92 - 22407834
-AAUCCCAUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACU---GCUAACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGGAC
-....((.(((((..(((((((((...(((((--.....))----))).)))))).)))(((((---((....)))).)))..-..........)-------)))))).. ( -34.70)
>DroPse_CAF1 49213 102 - 1
UCGUCCCGUGCCAAAUGGGUCAAGUUUCUGGCGCUUCCAGC----UAGCCUUGACUCUGC-CCC---GCUUACGCAGCAUCCGCUGCCAAAUAGUCGAUGGUGCCACAAC
.......(..(((...((((((((...(((((.......))----))).))))))))...-..(---(((...(((((....))))).....)).)).)))..)...... ( -33.20)
>DroSec_CAF1 37403 92 - 1
-AGUUCCCUGGCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACU---GCUUACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGAAC
-.(((((((((((..(((((((((...(((((--.....))----))).)))))).)))(((((---((....)))).)))..-)))))......-------))..)))) ( -30.90)
>DroSim_CAF1 39160 95 - 1
-AAUUCCCUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUCCACGACUGCUGCUUACGCAGCUUGAG-UGCCAAAUAAU-------GGCAGGAC
-.....(((((((...((((((((...(((((--.....))----))).))))))))(((....(((((....)))))....)-))........)-------)))))).. ( -40.90)
>DroEre_CAF1 37666 90 - 1
-AAU-CCCUGCCAAAUGGGUCAAGUUUCUGGC--AUCCAGC----UAGCCUUGACUC-CCGACU---GCCUACGCAGCUUCAG-UGCCAAAUAAA-------GGCAGGUC
-...-.((((((....((((((((...(((((--.....))----))).))))))))-..(.((---((....))))).....-...........-------)))))).. ( -32.30)
>DroYak_CAF1 39167 96 - 1
-AAUUCCCUGCCAAAUGGGUCAAGUUGCUGGC--AUCCAGCUAGCUAGCCUUGACUCCCCGACU---GCUUACGCAGCUUCAG-UGCCAAAUAAU-------GGCAGCAC
-......((((((...((((((((..((((((--.....))))))....))))))))...(.((---((....))))).....-..........)-------)))))... ( -33.90)
>consensus
_AAUUCCCUGCCAAAUGGGUCAAGUUUCUGGC__AUCCAGC____UAGCCUUGACUCCACGACU___GCUUACGCAGCUUCAG_UGCCAAAUAAU_______GGCAGGAC
.......(((((....((((((((((.((((.....))))......)).))))))))................(((.(....).)))...............)))))... (-18.77 = -19.05 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:33 2006