| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,191,453 – 11,191,556 |
| Length | 103 |
| Max. P | 0.715086 |
| Location | 11,191,453 – 11,191,556 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 83.12 |
| Mean single sequence MFE | -9.10 |
| Consensus MFE | -8.88 |
| Energy contribution | -8.00 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.19 |
| Mean z-score | 0.13 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.715086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11191453 103 + 22407834 UUGUUAGGUAAAAAAAAAAAAAUGGAAAACA-AUGUAAUUUAA-AACGAUAAGACUAAAUGAUACCCAUGCUUGUAGUAAAGCUUAAUAGGAGAAAGAAAACAAA (((((((((.............((.....))-...........-.((.(((((.....(((.....))).))))).))...)))))))))............... ( -9.70) >DroSec_CAF1 27969 99 + 1 UUGUUAGGUCAAA------AAAUGAAAAACAAAAGAAAUUUAAAAACGAUGAGACUAAAUGAUACCCAUGUUUAUAGUAAUGCUUAAUAGGAGGAAGAAACCAAA (((((((((....------............(((....)))....((.(((((.....(((.....))).))))).))...)))))))))..((......))... ( -8.10) >DroSim_CAF1 27753 92 + 1 UUGUUAGGUCAAA------AAAUGGAAAACAAAUGGAAUUUAA-AACGAUGAGACUAAGUGAUACCCAUGCUUAUAGUACAGCUUAAUAGGAGAAAGAA------ (((((((((....------...((.....))............-.((.(((((.....(((.....))).))))).))...))))))))).........------ ( -9.50) >consensus UUGUUAGGUCAAA______AAAUGGAAAACAAAUGAAAUUUAA_AACGAUGAGACUAAAUGAUACCCAUGCUUAUAGUAAAGCUUAAUAGGAGAAAGAAA_CAAA (((((((((.............((.....))..............((.(((((.....(((.....))).))))).))...)))))))))............... ( -8.88 = -8.00 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:32 2006