| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,181,564 – 11,181,662 |
| Length | 98 |
| Max. P | 0.799896 |
| Location | 11,181,564 – 11,181,662 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Mean single sequence MFE | -16.10 |
| Consensus MFE | -8.83 |
| Energy contribution | -8.88 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11181564 98 - 22407834 -----------C---GC----UC-CCU--CCAUAAAGUCGUGUUUAUGCCUUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGCGCACAUUCGUUACUUUUUAUACAACCCCG- -----------.---((----..-...--..((((((..(((((((((......)))))))))))))))..(((((((....))))))).))...........................- ( -12.10) >DroVir_CAF1 14064 101 - 1 ---GC-GC---A---CCGCCCUU-GCC--CU--AAAGUGGUGUUUAUGCACUCUCAUAAACAUUUUCAUUUUAAUGAUUUUUAUUAUUGUGCACAUUCGUUACUUUUUAUGCGCCC---- ---((-((---(---.(((((((-...--..--.))).))))....(((((....(((((.....((((....))))..)))))....)))))................)))))..---- ( -22.30) >DroGri_CAF1 20936 100 - 1 ---GCCUC---U---CC----UC-GCU--UCGUGGAGUCGUCUUUAUGCACUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGCGCACAUUCGUUACUUUUUAUGCGACC---- ---.....---.---..----((-((.--..((((((((((....))).)))).)))..............(((((((....))))))).....................))))..---- ( -12.70) >DroWil_CAF1 18798 107 - 1 CAAGCAAU---C---GC----UC-CCUUCCCAUAAAGUCGUGUUUAUGCCUUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGUGCACAUUCGUUACUUUUUAUAUACA-UCC- ...(((..---.---..----..-.......((((((..(((((((((......)))))))))))))))..(((((((....)))))))))).......................-...- ( -13.20) >DroMoj_CAF1 17773 105 - 1 ---CC-G--------CUGCCGCU-GCC--CUAUAAAGUCGUGUUUAUGCACUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGCGCACAUUCGUUACUUUUUAUGCGAGGCAAG ---..-.--------.((((((.-((.--..((((((..(((((((((......)))))))))))))))...((((((....))))))))))....((((..........)))))))).. ( -21.10) >DroAna_CAF1 16402 112 - 1 CCCCC-CUUAACGCUGC----UCCCUU--CCAUAAAGCCGUGUUUAUGCCUUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGCGCACAUUCGUUACUUUUUAUACAUCCCCG- .....-..(((((.(((----......--..((((((..(((((((((......)))))))))))))))..(((((((....))))))).)))....))))).................- ( -15.20) >consensus ___GC_G____C___CC____UC_CCU__CCAUAAAGUCGUGUUUAUGCACUCUCAUAAACAUUUUUAUUUUAAUGAUUUUUAUUAUUGCGCACAUUCGUUACUUUUUAUACAACCCC__ .................................(((((.(((((((((......)))))))))........(((((((....)))))))............))))).............. ( -8.83 = -8.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:28 2006