| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,170,111 – 11,170,207 |
| Length | 96 |
| Max. P | 0.824606 |
| Location | 11,170,111 – 11,170,207 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 88.19 |
| Mean single sequence MFE | -31.42 |
| Consensus MFE | -23.81 |
| Energy contribution | -24.75 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.824606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11170111 96 - 22407834 CACGAAGUGAAUACAGUGCGUACCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUUUCCCAAGCGAAAGGGAUGCGAGAUUACUCAUACGCCUA ......(((....((.(((((......))))).))....)))((((.(((((((((((((((........))))....))))))))))).)))).. ( -32.40) >DroSec_CAF1 6806 95 - 1 CGCGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUUCCUCAAGC-AAAGGGAUGCGAGAUUACUCAUACGCCUA .(((...((....((.(((((......))))).)).)).)))((((.((((((((((((.....((-(......))))))))))))))).)))).. ( -32.80) >DroEre_CAF1 7206 95 - 1 CACGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGGCAACGGGGCGGAUGAGUGAUUGCCCCAAGACAAUGGU-UGCGAGAUUAGUCAUACGCCUA ..((...((....((.(((((......))))).)).)).))(((((.((((.(((((((.(((......))).-.))..))))).)))).))))). ( -27.50) >DroYak_CAF1 7143 96 - 1 CACGUAGUGAAUACAGUGGGUAUUAGCAUGUGGUGGCAACGGGGCGGAUGAGUGAUUGCCCCAAGACAGUGGCAUGCGAGAUUACUCAUACGCCUA (((((.((.(((((.....))))).))))))).((....))(((((.((((((((((((.(((......)))...))..)))))))))).))))). ( -33.00) >consensus CACGGAGUGAAUACAGUGCGUAUCAGAAUGUAGUGCCAACGCGGCGGAUGAGUGAUUGCCCCAAGACAAAGGGAUGCGAGAUUACUCAUACGCCUA ..((...((....((.(((((......))))).)).)).)).((((.(((((((((((((((........)))....)))))))))))).)))).. (-23.81 = -24.75 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:27 2006