Locus 3826

Sequence ID 2L_DroMel_CAF1
Location 11,162,278 – 11,162,398
Length 120
Max. P 0.717003
window6027

overview

Window 7

Location 11,162,278 – 11,162,398
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 99.44
Mean single sequence MFE -36.70
Consensus MFE -36.70
Energy contribution -36.70
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 1.00
SVM decision value 0.39
SVM RNA-class probability 0.717003
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11162278 120 - 22407834
UUACUGGGAUCGGGAAUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA
...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70)
>DroSec_CAF1 25 120 - 1
UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA
...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70)
>DroSim_CAF1 25 120 - 1
UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA
...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... ( -36.70)
>consensus
UUACUGGGAUCGGGAGUUCAACAGAGAUCGCAGCUCCAAGGAUCGCGAAAGGGAUCUCGAGUGGGAGCGGGAACGGGCUCGCGAGUGGGAGAGAGAGCGGGAACGAGAUUGGGAUAGGGA
...(((.((((.(........)...)))).)))((((..(((((.(....).)))))...(((((..((....))..))))).....))))......((....))............... (-36.70 = -36.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:20 2006