Locus 3824

Sequence ID 2L_DroMel_CAF1
Location 11,156,956 – 11,157,069
Length 113
Max. P 0.706726
window6024

overview

Window 4

Location 11,156,956 – 11,157,069
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 98.58
Mean single sequence MFE -23.94
Consensus MFE -22.76
Energy contribution -23.16
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.95
SVM decision value 0.37
SVM RNA-class probability 0.706726
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11156956 113 - 22407834
AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU
...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -24.20)
>DroSec_CAF1 5288 113 - 1
AUACUUUCUGGUAACGGAAAAGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU
..((((((((....))).)))))((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -21.20)
>DroSim_CAF1 5321 113 - 1
AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU
...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -24.20)
>DroEre_CAF1 5251 113 - 1
AUACUUUCUGGCAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU
...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... ( -26.70)
>DroYak_CAF1 5279 113 - 1
AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCUGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUCU
...(((((((....)))))))(.((((((..........((((((((......))).)))))..(((((.((.(((...((((....))))))).)))))))..)))))).). ( -23.40)
>consensus
AUACUUUCUGGUAACGGAAAGGUGAACUUUGCCAUGAAAAUUUCAUCAGAUCUGAUAGGAAUAUGUUGAAGAUAUUUUGUAAGAUGCCUUAAAUUUCUCAACUCAAGUUCUUU
...(((((((....)))))))..((((((..........(((((((((....)))).)))))..(((((.((.(((...((((....))))))).)))))))..))))))... (-22.76 = -23.16 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:17 2006