Locus 3822

Sequence ID 2L_DroMel_CAF1
Location 11,144,915 – 11,145,069
Length 154
Max. P 0.959381
window6020 window6021

overview

Window 0

Location 11,144,915 – 11,145,029
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 76.02
Mean single sequence MFE -39.98
Consensus MFE -21.17
Energy contribution -22.32
Covariance contribution 1.14
Combinations/Pair 1.33
Mean z-score -2.30
Structure conservation index 0.53
SVM decision value 1.50
SVM RNA-class probability 0.959381
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11144915 114 + 22407834
ACGUGCUGCAGACAAUUGUCGGUCUCUAAGCACACCUCAUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGGCCCUGGGCCACCUUCAAGGUCCAGGGCACAAGC
..(((((..((((........))))...)))))......(((....)))..((((...........))))....((((..((((((((((........))))))))))..)))) ( -45.60)
>DroSec_CAF1 14115 114 + 1
ACGUGCUGCAGACAAUUGUCGGUCUCUAAGCACACCUCCUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGCCCCUGGGCCACCUUCAAGGCCCAGGGCACAAUC
..((((....(((....)))((...((((((........(((....)))..((((...........))))....))))))))((((((((........)))))))))))).... ( -42.60)
>DroSim_CAF1 14140 114 + 1
ACGUGCUGCAGACAAUUGUCGGUCUCUACGCACACCUCCUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGCCCGUGGGCCACCUUCAAGGCCCAGGGCACAAUC
..((((((.((((........)))).)).)))).(((..(((....)))..((((...........))))..)))....((((.((((((........))))))))))...... ( -40.40)
>DroEre_CAF1 14285 114 + 1
ACGAGCAACAGACAAUUGUCAGCCUCGAAGCAAACUUCCUGGGCCAGACACUCCCACAUGUGGCAGGGGAAAAGGCUUAGGCCCUGGGACACCUUCAUGCUCCAGGGCACAAGC
.((((.....(((....)))...))))((((....(((((..((((.(..........).))))..)))))...))))..(((((((..((......))..)))))))...... ( -39.30)
>DroYak_CAF1 14555 114 + 1
ACGAGCAACAGACAAUUGUCGGCCUCGAGGAAAACAUCCUUGGCGAGGCACUCCCACAUGUGGCAGGGGAAAAGGCUUAGGUUCUGGGCCACCUUCAUGGUCCAGGGCACAAGC
..((((....(((....))).((((((((((.....))))...))))))..((((.(........)))))....))))..(((((((((((......)))))))))))...... ( -43.40)
>DroAna_CAF1 13843 114 + 1
GCGAGCAACACAAAGUAAUCGGCCUGAGGUCGAUUUUCGUUAAACAGGCACAUCCACAGGCAGACGGGGAGCUUACAGAGGCCUUGGACAAUCUUAAUGCACCAGGGCAGGAUC
(..(((............((((((...))))))((..((((......((.(.......))).))))..)))))..)....(((((((.((.......))..)))))))...... ( -28.60)
>consensus
ACGAGCAACAGACAAUUGUCGGCCUCUAAGCAAACCUCCUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGGCCCUGGGCCACCUUCAAGGUCCAGGGCACAAGC
..........(((....)))(((((...........((........))...((((...........))))..)))))...((((((((((........))))))))))...... (-21.17 = -22.32 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 11,144,953 – 11,145,069
Length 116
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 78.28
Mean single sequence MFE -40.87
Consensus MFE -25.15
Energy contribution -25.98
Covariance contribution 0.84
Combinations/Pair 1.38
Mean z-score -1.81
Structure conservation index 0.62
SVM decision value 0.73
SVM RNA-class probability 0.834511
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11144953 116 + 22407834
AUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGGCCCUGGGCCACCUUCAAGGUCCAGGGCACAAGCAUCACGGGACUACAUUGUUGCCACACGGACAAGCCAGCUG
.(((....)))...........((((((.((..(((((((..((((((((((........))))))))))..)))).((....)))))..)).))))))...((.....))..... ( -41.90)
>DroVir_CAF1 15050 116 + 1
UCUGGCUAGACACUCCCAUAGGCUGAAUGCGUGCUGUACGAGUUCUUGAAACACCUUCAAACUCCAAGGAAGAAGCAUCACGAAGCUAAAUCGCAGCCAAGCUUGCAGGCUUGCGC
....((..............(((((.((((...((....(((((..((((.....)))))))))......))..))))..(((.......))))))))(((((....))))))).. ( -24.80)
>DroSec_CAF1 14153 116 + 1
CUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGCCCCUGGGCCACCUUCAAGGCCCAGGGCACAAUCAUCACGGGACUACAUUGUUGCCACACGGACAAGCCAGCUG
.(((....)))..((((...........))))...(((((..((.(((((((........)))))))((((((((..((....))....)))).))))....))..)))))..... ( -40.10)
>DroSim_CAF1 14178 116 + 1
CUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGCCCGUGGGCCACCUUCAAGGCCCAGGGCACAAUCAUCACGGGACUACAUUGUUGCCACACGGACAAGCCAGCUG
.(((....)))..((((...........))))...(((((.((((.((((((........))))))))))...........(((((......))).))........)))))..... ( -39.70)
>DroEre_CAF1 14323 116 + 1
CUGGGCCAGACACUCCCACAUGUGGCAGGGGAAAAGGCUUAGGCCCUGGGACACCUUCAUGCUCCAGGGCACAAGCAUCACGGGACUGCAUUUUUGCCACACGGAGAGGCCUGCUG
..(((((.....((((....(((((((((((...((((((..(((((((..((......))..)))))))..)))).((....))))...))))))))))).)))).))))).... ( -48.00)
>DroYak_CAF1 14593 116 + 1
CUUGGCGAGGCACUCCCACAUGUGGCAGGGGAAAAGGCUUAGGUUCUGGGCCACCUUCAUGGUCCAGGGCACAAGCAUCACGGGACUGCAUUGCUGCCACACGGAUAAGCCCGCUG
...((((.(((..(((....((((((((.((...((((((..(((((((((((......)))))))))))..)))).((....))))...)).)))))))).)))...))))))). ( -50.70)
>consensus
CUUCGCAAGAAACUCCCACAAAUGGCAAGGGAAUAGGCUUAGGCCCUGGGCCACCUUCAAGGUCCAGGGCACAAGCAUCACGGGACUACAUUGUUGCCACACGGACAAGCCAGCUG
....((.......((((...........))))...(((((..((((((((((........))))))))))...........(((((......))).))........))))).)).. (-25.15 = -25.98 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:14 2006