Locus 3821

Sequence ID 2L_DroMel_CAF1
Location 11,143,840 – 11,143,948
Length 108
Max. P 0.515874
window6019

overview

Window 9

Location 11,143,840 – 11,143,948
Length 108
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -26.61
Consensus MFE -15.66
Energy contribution -16.25
Covariance contribution 0.59
Combinations/Pair 1.09
Mean z-score -1.84
Structure conservation index 0.59
SVM decision value -0.03
SVM RNA-class probability 0.515874
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11143840 108 - 22407834
CUGGCCUCCGCAUGGAACACACCAAUGCUAUCCUUCGUUAGUA-----------GACCCAUUACUUAAAUCUGGGUCACCGGUGUUCAAUUCAAG-AGUUACACCCUUUGCCCUUUACUU
..(((.(((....)))..(((((..(((((........)))))-----------((((((...........))))))...)))))..........-.............)))........ ( -24.30)
>DroSec_CAF1 12960 108 - 1
CUGGCCUCCGCCUGGAACACACCAAUGCUAUCCUUCGUUAGUA-----------GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUGCAAG-AGUUGCACCCUUUGCCCUUUACUU
..(((.........((((((.....(((((........)))))-----------((((((...........))))))....))))))..((((..-...))))......)))........ ( -26.80)
>DroSim_CAF1 12981 108 - 1
CUGGCCUCCGCCUGGAACACACCAAUGCUAUCAUUCGUUAGUA-----------GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUUCAAG-AGUUGCACCCUUUGCCCUUUACUU
..(((....)))..((((((.....(((((........)))))-----------((((((...........))))))....))))))......((-((..(((.....))).)))).... ( -26.10)
>DroEre_CAF1 13074 108 - 1
CUGGCCUCCGCCUGGAACACACCAAUGCUUUCCUUCGUUAGUA-----------GACCCAUUACUCGAAUCUGGGUCACAGGUGUUCAAUUCGAG-AGCAGAGCGCCUUGCCCUUUACUU
..((((((.((((.(((.(((((..((((..(....)..))))-----------((((((...........))))))...)))))....))).))-.)).))).)))............. ( -33.30)
>DroYak_CAF1 13105 108 - 1
CUGGCCUCCGCCUGGAACACACCAAUGCUUUCCUUCGUUAGUA-----------GACCCAUUACUCAAAUCUAGGUCACCGGUGUUCAAUUUAAG-AACUCAACCCUUUGGCCUUUACUU
..(((((((....)))..(((((..((((..(....)..))))-----------((((...............))))...)))))..........-.............))))....... ( -21.56)
>DroAna_CAF1 12789 110 - 1
CUGGCUUCCGCAUGGAACACACCCAUGCUAUCAUUUGUGAGUACUAUGACAGGUGAACCAU------AAACUGGGUCACAUAGGUUCAAUUCAAAGUGCUUCUCAUCUUGACAUUU----
.........((((((.......))))))..(((..((.(((((((.(((....((((((..------...............))))))..))).)))))))..))...))).....---- ( -27.63)
>consensus
CUGGCCUCCGCCUGGAACACACCAAUGCUAUCCUUCGUUAGUA___________GACCCAUUACUCAAAUCUGGGUCACCGGUGUUCAAUUCAAG_AGCUGCACCCUUUGCCCUUUACUU
(.(((....))).)((((((((.((((........)))).))............((((((...........))))))....))))))................................. (-15.66 = -16.25 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:12 2006