| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,143,651 – 11,143,765 |
| Length | 114 |
| Max. P | 0.744412 |
| Location | 11,143,651 – 11,143,765 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.19 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -12.46 |
| Energy contribution | -14.58 |
| Covariance contribution | 2.12 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744412 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11143651 114 + 22407834 ---GUCCUAAAUAACAAAUGUAAUUUGUGCAACUGGGCUCUAAAGUUGUGUAGUGUAUUUUGUAUACAAGAAAAUAAAUUUAUAUGGCUUUUGGUUUGUUGCACU-UUUUUUUAUGAC ---(((.((((..((....)).....(((((((.(((((..(((((..(((((..((((((.(.....).))))))...)))))..))))).)))))))))))).-....)))).))) ( -27.40) >DroSec_CAF1 12773 112 + 1 CAGGUCCAAAAUAGCAAAUGUAAUUUGUGCAACUGGGCUCUAAAGUUGUGUAGUGUCUUUUGUAUACAA---AAGCAAUUUAUAUGGCUUUUGGUUUGUUGCACU-UG--UUUAUAGC ..................(((((...(((((((.(((((..(((((..((((.((.((((((....)))---)))))...))))..))))).)))))))))))).-..--.))))).. ( -31.00) >DroSim_CAF1 12791 115 + 1 CAGGUCCUAAAUAACAAAUGUAAUUUGUGCAACUGGGCUCUAAAGUUGUGUAGUGUCUCUUGUAUACAAGAAAAUAAAUUUAUAUGGCUUUUGAUUUGUUGCACU-UG--UUUAUAGC ..................(((((...(((((((.....((.(((((..(((((....(((((....)))))........)))))..))))).))...))))))).-..--.))))).. ( -25.70) >DroEre_CAF1 12929 95 + 1 -----GAUAAAUAACAAAU---------------GGGCUCUAAAGUUGUGUAGUGUCUUUUGUGUUCAAGGAAUGCAGGUUAUAUAGCUUUUGUUCCGGUGCACU-UC--UUUAUGGC -----..............---------------..(((.(((((..(((((.(.....(((....)))((((((.(((((....))))).))))))).))))).-.)--)))).))) ( -20.50) >DroYak_CAF1 12935 107 + 1 CAAGUAAUAAAUAACAAAUGUAAUUUGUGCCACUGGACUCUAAAGUUGUGUAGUGUCUUUUGUAUUCAAGAAAUGACACUUAUAUAACUUU---------GUACUUUU--UUUAUGGC ......((((((.((....)).))))))((((..(((...((((((((((((((((((((((....)))))...))))).)))))))))))---------)......)--))..)))) ( -24.50) >consensus CA_GUCCUAAAUAACAAAUGUAAUUUGUGCAACUGGGCUCUAAAGUUGUGUAGUGUCUUUUGUAUACAAGAAAAGAAAUUUAUAUGGCUUUUGGUUUGUUGCACU_UG__UUUAUGGC ..........................(((((((.((.(...((((((((((((....(((((....)))))........)))))))))))).).)).))))))).............. (-12.46 = -14.58 + 2.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:11 2006