Locus 382

Sequence ID 2L_DroMel_CAF1
Location 1,199,493 – 1,199,601
Length 108
Max. P 0.587840
window603

overview

Window 3

Location 1,199,493 – 1,199,601
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 89.63
Mean single sequence MFE -34.06
Consensus MFE -25.40
Energy contribution -25.84
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.64
Structure conservation index 0.75
SVM decision value 0.11
SVM RNA-class probability 0.587840
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1199493 108 + 22407834
GGGUCCUGCGCAUCCUGGGGAUCACCAACCAGGACCGCAUCCCCCUCACCACGGAGAUCCGAAGCCCCAUCACGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU
.(((((((((..((((((((....))..)))))).)))..........((((((....)))..(((((.....)).........)))...)))...))))))...... ( -30.90)
>DroSec_CAF1 15183 107 + 1
GGGUCCUGCUCAUCCUGGGGAUCACCAUCCUGGAGCACAUCC-CCGCACCACGGAGAUCCGAAGCCCCACCAUGGUCAUCACUAGGCCCAUGGACAAGGACUAUAAAU
.(((((((..((((((((.(((.(((((..(((.((..(((.-(((.....))).))).....)).)))..))))).))).)))))...)))..).))))))...... ( -36.60)
>DroSim_CAF1 16493 108 + 1
GGGUCCUGCUCAUCCUGGGGAUCACCAUCCUGGACCACAUCCCCCGCACCACGGAGAUCCGAAGCCCCAUCAUGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU
.(((((((..(((((((((((((.((.....))..........(((.....))).)))))((.(.((......)).).)).)))))...)))..).))))))...... ( -31.20)
>DroEre_CAF1 16322 108 + 1
GGGUCCUGCGCAUCCUGGCGACCACCAUCCAGGACCGCAUCCUCCGCACCACGGAGAUCCGAAGCACCACCACGGACACCACUAGGCCUGUGGACAAGGACUAUGAGU
.((((((((((.((((((..........))))))..))...(((((.....))))).......))....((((((...((....)).))))))...))))))...... ( -37.40)
>DroYak_CAF1 15960 108 + 1
GGGUCCUGGGCAUCCUGGGGACCACCAUCCAGGACCGCAUCCUCCUCACCACGGAGAUCCGAAGCCCCACCACGGACACCACUAGGCCUAUAAACAAGGACUAUGAAA
((((((.((((.(((((((........))))))).((.(((.(((.......)))))).))..))))......)))).))..(((.(((.......))).)))..... ( -34.20)
>consensus
GGGUCCUGCGCAUCCUGGGGAUCACCAUCCAGGACCGCAUCCCCCGCACCACGGAGAUCCGAAGCCCCACCACGGACAUCACUAGGCCCAUGGACAAGGACUAUAAAU
.((((((........(((((...........(((.....))).........(((....)))...)))))((((((.(........).))))))...))))))...... (-25.40 = -25.84 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:30 2006