Locus 3819

Sequence ID 2L_DroMel_CAF1
Location 11,143,495 – 11,143,597
Length 102
Max. P 0.876619
window6017

overview

Window 7

Location 11,143,495 – 11,143,597
Length 102
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 75.14
Mean single sequence MFE -27.38
Consensus MFE -19.19
Energy contribution -19.22
Covariance contribution 0.03
Combinations/Pair 1.26
Mean z-score -1.34
Structure conservation index 0.70
SVM decision value 0.90
SVM RNA-class probability 0.876619
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11143495 102 + 22407834
AUCAGAGAGUUACCUUGGAAGCCGGCGCUAAAGUUCGAGCAAAGGUGUGAAAUGUACUUUUGUUUGAGACAAUUGGAUCGGAGCAUUUCUAG--------GGAAUAUAAA-
............(((((((((((((..((((..((((((((((((((.......))))))))))))))....)))).))))....)))))))--------))........- ( -29.10)
>DroPse_CAF1 13660 104 + 1
UGAGAGGCAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGGGAAAUGUGCUUUUGUUGGAGACAAUUGAGUCAGAGCAUUUCUACAU------AGGAUAGAAG-
..........((((((((((.(((....)))..))))....))))))((((((((((((..((((....)))).))))....))))))))....------..........- ( -26.60)
>DroEre_CAF1 12708 102 + 1
AUCAAGAACUCACCUUGGAAGCUGGAGCCAAAGUUCGUGCAAAGGUGUGAAAUGUACUCUUGUUGGAGACAAUUGGAUCGGAGCAUUUCUGU--------GGGAUUGAAA-
.((((...(((((...(((((((.((.((((..((((..(....)..)))).(((.((((....))))))).)))).)).).)).)))).))--------))).))))..- ( -27.70)
>DroWil_CAF1 16984 109 + 1
AUUAAGA-AUUACCUUCGAGGCAGGUGCAAGUGUUCUUGCAUAGGUAUGAAACGUGCUCUUGUUGGAGACAAUUGAGUCUGAGCAUUUCUAAAUCGAAAGAGAAUGAAAA-
.......-..(((((.....(((((.((....)).)))))..))))).....((.((((..((((....)))).)))).))....((((....((....))....)))).- ( -28.50)
>DroAna_CAF1 12476 101 + 1
AUUAAUACUCUACCUUUGAGGCGGGGGCCAGAGUUCGAGCAAAGGUAUGAAAUGUACUCUUAUUGGAGACUAUGGAGUCGGCGCAUUUCUAA----------AAUAAACAU
..........((((((((.(((....))).(....)...)))))))).((((((((((((....(....)...)))))....)))))))...----------......... ( -25.80)
>DroPer_CAF1 13798 104 + 1
UGAGAGGCAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGGGAAAUGUGCUUUUGUUGGAGACAAUUGAGUCAGAGCAUUUCUACAU------AGGAUAGAAG-
..........((((((((((.(((....)))..))))....))))))((((((((((((..((((....)))).))))....))))))))....------..........- ( -26.60)
>consensus
AUAAAGACAUUACCUUCGAGGCUGGGGCCAGAGUUCGUGCAAAGGUGUGAAAUGUACUCUUGUUGGAGACAAUUGAGUCGGAGCAUUUCUAA________AGAAUAGAAA_
..........((((((....((..((((....))))..)).)))))).(((((((((((..((((....)))).))))....)))))))...................... (-19.19 = -19.22 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:10 2006