| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,141,028 – 11,141,130 |
| Length | 102 |
| Max. P | 0.600570 |
| Location | 11,141,028 – 11,141,130 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 77.63 |
| Mean single sequence MFE | -20.56 |
| Consensus MFE | -14.48 |
| Energy contribution | -14.40 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.600570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11141028 102 - 22407834 UAUAUGU-CAAUAACUUAUUCCUUCAGGUGCGACAUGAGAAUAUUAUCAACUUCAUUGGAGCGUCCACGGAUCACGGAUCCGUGAUCAUCUUCACCACUUACU ..(((((-(....((((........))))..))))))...................(((((.(..((((((((...))))))))..)..)))))......... ( -21.40) >DroSec_CAF1 10133 102 - 1 UGCAUUU-CAAUAACUUAAUCCUUCAGGUGCGACAUGAAAAUAUUAUUAACUUUAUUGGAGCGUCCACGGAUCACGGAUCCGUGAUCAUCUUCACCACUUACU .......-..................((((.((.((((............(((.....)))....((((((((...)))))))).)))).))))))....... ( -19.30) >DroSim_CAF1 10191 102 - 1 UAUAUUU-CAAUAAUACAAACCUACAGGUGCGACAUGAAAAUAUUAUCAACUUCAUUGGAGCGUCCACGGAUCACGGAUCCGUGAUCAUCUUCACCACUUACU .......-..................(((((..((((((............)))).))..))(..((((((((...))))))))..)......)))....... ( -20.70) >DroEre_CAF1 10282 100 - 1 AGCAUUU-UAACAACA--AUCGUUCAGGUGCGGCAUGAGAACAUUAUCAACUUCAUUGGGGCCUCCACGGAUCACGGCUCCGUGAUCAUAUUCACCACCUACU .((((((-.(((....--...))).))))))(((.(((........))).((.....)).)))......(((((((....)))))))................ ( -23.50) >DroWil_CAF1 13111 99 - 1 UAAGUUU-U---AACUGUGCACUUUAGGUGCGACAUGAAAACAUAAUUAAUUUCAUUGGGGCCUCUUUGGAGCAUGGCUCGGUGAUCAUUUUCACCACAUACU ...((((-(---...(((((((.....)))).)))..)))))................(((((............)))))(((((......)))))....... ( -25.70) >DroAna_CAF1 10091 97 - 1 UACCUUUUAAAUAAUA------UCAAGGUACGCCACGAGAACAUUAUUAACUUUAUUGGGGCCUCCACGGAUCAUGGAUCGGUUAUCCUGUUUACCACCUAUU ................------...((((..(((.(((.................))).)))......((..((.((((.....))))))....))))))... ( -12.73) >consensus UACAUUU_CAAUAACA_AAUCCUUCAGGUGCGACAUGAAAACAUUAUCAACUUCAUUGGAGCCUCCACGGAUCACGGAUCCGUGAUCAUCUUCACCACUUACU ..........................((((.((.((((............(((.....)))....((((((((...)))))))).)))).))))))....... (-14.48 = -14.40 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:06 2006