Locus 3812

Sequence ID 2L_DroMel_CAF1
Location 11,125,917 – 11,126,016
Length 99
Max. P 0.528124
window6009

overview

Window 9

Location 11,125,917 – 11,126,016
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 80.88
Mean single sequence MFE -23.32
Consensus MFE -13.87
Energy contribution -14.07
Covariance contribution 0.20
Combinations/Pair 1.37
Mean z-score -1.70
Structure conservation index 0.59
SVM decision value -0.01
SVM RNA-class probability 0.528124
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11125917 99 - 22407834
AUCAUCGAUCAUACUGAUUCUAGCCACCAGCUUAGAUAUUACUUCAACCGGUGACUCCCGCUGGUAAAGCUGUUUAUCUAGCUCGAUUUUAAUGUCCUC
...(((((((.....))..((((....((((((.((.......)).(((((((.....))))))).)))))).....)))).)))))............ ( -21.20)
>DroSec_CAF1 5177 99 - 1
AUCAUCGAUUACACUGAUCCUAGCCACCAGCUUUGAUAUUACUUCAACCGGAGACUCUCGCUGGUAAAGCUGCUUAUCGAGCUGGAUUUUAAUAUCCUC
......(((......(((((.(((.((((((.((((.......))))..(....)....))))))...)))((((...)))).))))).....)))... ( -22.60)
>DroSim_CAF1 5364 99 - 1
AUCAUCGACUUUACUGAUCCUAGCCACCAGCUUUGAUAUUACUUCAACCGGCGACUCUCGCUGGUAAAGCUGCUUAUCUAGCUGGAUUUUAAUAUCCUC
......((..(((..(((((.(((...(((((((((.......)).(((((((.....))))))))))))))........)))))))).)))..))... ( -26.70)
>DroEre_CAF1 5975 99 - 1
GUCAUCGCCAACAGUGAUCCUAUCCACCAGCUUAGAUAUCACUUUUACCGGCGACACCCGCUGGUAAAGCUGCUUGUCUAGAUCGAUUUUAAUGUCAUC
((((((((.....)))))..............((((((.((.(((((((((((.....))))))))))).))..))))))))).(((......)))... ( -26.00)
>DroYak_CAF1 5240 99 - 1
AUCAUCGCCCACAGUGAUCCUAGCCACCAGCUUGGAUAUCACUUCAACCGGCGACUCGCGUUGGUAGAGCUGCUUAUCUAAAUCGAUUUUAAUGUCCUC
...((((.....((((((((.(((.....))).)))..)))))((.(((((((.....))))))).))...............))))............ ( -21.90)
>DroAna_CAF1 4595 99 - 1
GUCGUCGCCCACUGUUAUUCUGGUUACUAGUUUGGAAAUCACUUCGAGCGGCGAUGCCCUCUGGUACAGCUGAUUAUCCAGUUCCAUCUUUAUGUCCUC
..(((((((.(((........))).....(((((((......)))))))))))))).....(((...(((((......))))))))............. ( -21.50)
>consensus
AUCAUCGACCACACUGAUCCUAGCCACCAGCUUAGAUAUCACUUCAACCGGCGACUCCCGCUGGUAAAGCUGCUUAUCUAGCUCGAUUUUAAUGUCCUC
...................((((....((((((.((.......)).(((((((.....))))))).)))))).....)))).................. (-13.87 = -14.07 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:02 2006