Locus 3811

Sequence ID 2L_DroMel_CAF1
Location 11,125,363 – 11,125,457
Length 94
Max. P 0.924687
window6008

overview

Window 8

Location 11,125,363 – 11,125,457
Length 94
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 75.12
Mean single sequence MFE -17.32
Consensus MFE -10.42
Energy contribution -10.62
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 0.60
SVM decision value 1.16
SVM RNA-class probability 0.924687
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11125363 94 - 22407834
---UAAACUAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA
---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30)
>DroPse_CAF1 4598 73 - 1
-----------------CUAC---AUUUCAG-GCA---AA----------GAUAUACUCACAUAUAAGGCCUUGGUAAUCACAGUCCGAUCAAAUCGACCCGGAUGG
-----------------.(((---.....((-((.---..----------.((((......))))...))))..)))......(((((.((.....))..))))).. ( -12.40)
>DroSec_CAF1 4624 94 - 1
---UAAACUAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA
---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30)
>DroSim_CAF1 4811 94 - 1
---UAAACAAU-------UCCAAUAAUUCAUAAUA---AAGAAUGUUUUGGUCAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA
---........-------.((((..((((......---..))))...)))).................((....)).....((((..((((.....))))..)))). ( -18.30)
>DroEre_CAF1 5407 106 - 1
UCCUAAAUCAAUUUGAUCUUCAA-AAACCAUAAUAAUGAAAAACAUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA
((((...((.((((((((.....-.(((((....((((.....)))).)))))...............((....))...........)))))))).))..))))... ( -20.60)
>DroYak_CAF1 4700 92 - 1
-----------UUUAAUCUUCAA-AAAUCAUACGA---AAAAACAUUUUGGUUAUACUCACAUAUAGAGCCUUAGCAAUUACAUUUCGGUCGAAUCGACCAGGAUGA
-----------............-........(((---((.....)))))((((..(((.......)))...)))).....((((..(((((...)))))..)))). ( -16.00)
>consensus
___UAAAC_AU_______UCCAA_AAUUCAUAAUA___AAGAAUGUUUUGGUUAUACUCACAUAUAAAGCCUUGGCAAUUACAUUUCGGUCAAAUCGACCAGGAUGA
....................................................................((....)).....((((..((((.....))))..)))). (-10.42 = -10.62 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:01 2006