Locus 3810

Sequence ID 2L_DroMel_CAF1
Location 11,124,984 – 11,125,095
Length 111
Max. P 0.779446
window6007

overview

Window 7

Location 11,124,984 – 11,125,095
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 75.92
Mean single sequence MFE -29.18
Consensus MFE -15.74
Energy contribution -17.88
Covariance contribution 2.14
Combinations/Pair 1.31
Mean z-score -1.82
Structure conservation index 0.54
SVM decision value 0.55
SVM RNA-class probability 0.779446
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11124984 111 - 22407834
GCAUUAUGCUAACGCAUAUAAACUCAGCUCGGGAAUUGUGCGAGAGAAAUAGACAGAAGUUUUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGUGCUGUUAAAAAAAAGA
((.....))(((((((((.(((((((((((.((((....((((..(((((........)))))..)))).....)))).)))))))..))))))))).))))......... ( -33.50)
>DroGri_CAF1 3875 111 - 1
GUGCAAUGCUAAGGCAGACGAAUUCAGCGUCCUUUUCAUGCGACAAAAAUACACAAAAAUUGUGAUCAUCUAUUUUACGCAGUAAACUAUUUUGCGCUAAAAAAAGAAAAA
(((((((((....)))((((.......)))).......((((...((((((((((.....))))......)))))).))))..........)))))).............. ( -18.90)
>DroSec_CAF1 4245 111 - 1
GCAUUAUGCUAACGCAUAUAAACUCAGCUCGGGAAUUGUGCGAGAGAAAUAGACAGAAGUUUUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGAGCUGUUAAAGAAAAGA
((..(((((....))))).(((((((((((.((((....((((..(((((........)))))..)))).....)))).)))))))..))))...)).............. ( -32.00)
>DroEre_CAF1 5033 106 - 1
GCAUUAUGCUAACGCAAAUAAACUCAGCUCGGGAAUCGUGCGAGAGGAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGAAGCUGGUUGUUUUGAGCUGUUAAAGA-----
((....(((....)))....(((.(((((((..((....((((..(((((........)))))..))))....))..)).)))))))).......)).........----- ( -31.80)
>DroYak_CAF1 4321 111 - 1
GCAUUAUGCUAACGCAGAUAAACUCAGCUCGGGAAUCGUGCGAGAGAAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGGAGCAGGUUGUUCUGAGCUGUUAAAGAGAAGA
......(((....)))........((((((((((..(.(((..(((((((((((((.....))).))...))))))))...))).)...))))))))))............ ( -34.50)
>DroAna_CAF1 3680 104 - 1
GCAUGAUGCUGACGCAAAUGAACUCAGCGCCCAUGUCGUGGGAGAGAAACAAACAAAAGUCCUGAUCGUUGAUUUUCCGCAACUGAUUGCUCUGAGCUGUAAG-------G
.(((..(((....))).)))..(((((.((....((.((((((((..(((...((.......))...)))..)))))))).)).....)).))))).......-------. ( -24.40)
>consensus
GCAUUAUGCUAACGCAAAUAAACUCAGCUCGGGAAUCGUGCGAGAGAAAUAGACAGAAGUUCUGAUCGCUUAUUUUUCGGAGCUGGCUGUUUUGAGCUGUUAAAGAAAAGA
......(((....)))........((((((((((.....((..(((((((((...((........))..)))))))))...))......))))))))))............ (-15.74 = -17.88 +   2.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:00 2006