Locus 381

Sequence ID 2L_DroMel_CAF1
Location 1,196,228 – 1,196,347
Length 119
Max. P 0.532526
window602

overview

Window 2

Location 1,196,228 – 1,196,347
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 90.08
Mean single sequence MFE -41.00
Consensus MFE -34.45
Energy contribution -34.82
Covariance contribution 0.36
Combinations/Pair 1.14
Mean z-score -1.62
Structure conservation index 0.84
SVM decision value -0.00
SVM RNA-class probability 0.532526
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1196228 119 - 22407834
AUCCUUGGGGAAUGGCAGCCCGUAUCCCUGGAUGCGCUUCACCGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAACUUGUCGCCGGACAUGGUAGGAACUUGGAAGACAA
.((((..((((((((....)))).))))..).....(((.((((((((((((...(((........))).((((....))))........))))))))))))))).....)))...... ( -41.90)
>DroVir_CAF1 18756 119 - 1
AUCCUUGGGAAAGGGUAAUCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAGUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA
((((..(((....((....))....))).))))..(((((((((((((((((..(((((....((((.....((....)))))).))))))))))))))))).)))))........... ( -42.80)
>DroGri_CAF1 15134 119 - 1
AUCCUUGGGAAAGGGCAGGCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUAAUGAUCUCCUGCAUGGUGCUGAUGCGCAGUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA
((((..(((....((....))....))).))))..(((((((((((((((((...(((........))).((((....))))........)))))))))))).)))))........... ( -42.30)
>DroWil_CAF1 27341 119 - 1
AUCCUUUGGGAAGGGUAAACCAUAGCCCUGAAUACGUUUCACUGUAUUCGGUUUGAUGAUCUCCUGCAUGGUGCUAAUGCGUAAUUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA
.(((....)))(((((........)))))(((((((......))))))).((((..(((..((((((((((((.(((........))).))))).....)))))))..)))..)))).. ( -31.40)
>DroMoj_CAF1 17965 119 - 1
AUCUUUUGGGAAGGGCAGGCCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUAAUGCGCAGCUUGUCGCCAGACAUUGUAGGAACUUGAAAGACAA
.(((((..((.....((((((..(((.(((((......)).))).))).))))))......(((((((..((((....))))....((((....)))).))))))).))..)))))... ( -41.30)
>DroAna_CAF1 12443 119 - 1
GUCCUUGGGGAAGGGCAGACCAUAGCCCUGGAUUCGUUUCACCGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGUAGCUUAUCGCCGGACAUGGUAGGAACUUGGAAGACAA
.(((..(((..(((((........)))))...)))(((((((((((((((((..(((((.((..(((((.......))))).)).))))))))))))))))).)))))..)))...... ( -46.30)
>consensus
AUCCUUGGGGAAGGGCAGACCAUAGCCCUGGAUGCGUUUCACAGUGUUCGGCUUGAUGAUCUCCUGCAUGGUGCUGAUGCGCAGCUUAUCGCCGGACAUUGUAGGAACUUGAAAGACAA
((((...(((...((....))....))).))))..(((((((((((((((((..(((((.....(((((.......)))))....))))))))))))))))).)))))........... (-34.45 = -34.82 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:29 2006