Locus 3809

Sequence ID 2L_DroMel_CAF1
Location 11,124,513 – 11,124,627
Length 114
Max. P 0.546848
window6006

overview

Window 6

Location 11,124,513 – 11,124,627
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 86.43
Mean single sequence MFE -32.44
Consensus MFE -25.85
Energy contribution -25.07
Covariance contribution -0.77
Combinations/Pair 1.39
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.03
SVM RNA-class probability 0.546848
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11124513 114 + 22407834
CGCGGCUGUAUCGUACCUCACUCAAGACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUUCACGUUAUGAAAUGCUCCACCGGCCAUACUAUCACCCA
.(((((((.........((......))........))))).......((((((.(((((((((((......))))).......)))..))).)))))))).............. ( -26.34)
>DroSec_CAF1 3775 114 + 1
CGUGGCUGUAUCGUACCUCACUCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUCCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA
.(((((((((..(((.((.(((..........))).))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -34.31)
>DroSim_CAF1 3962 114 + 1
CGUGGCUGUAUCGUACCUCACCCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUCCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA
.(((((((((..(((.((.((............)).))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -32.91)
>DroEre_CAF1 4541 114 + 1
CGUGGCUGUAUCGUACCUCUCCCAAGACUCCCAGUCGGCCUACUUUGCGGUGGCGUAUCAAAGCAAACUACUGCUUCACGUUAUGAACUGCGCCACCGGUCACACUGUCACCCA
.(((((((((..(((.....((...(((.....)))))..)))..)))(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -33.31)
>DroYak_CAF1 3835 114 + 1
CGUGGCUGUAUCGUACCUCUCUCAAAACUCCCAGACGGCUUACUUUGUGGUGGCGUAUCAAAGCAAACUACUGCUUCACGUUAUGAACUGCGCCACCGGCCACACUAUCACCCA
.((((((.....((((((((............))).))..))).....(((((((((((((((((......))))).......)))..)))))))))))))))........... ( -32.81)
>DroAna_CAF1 3216 114 + 1
UGUGGCGGUAUCCUACCUGUCGCAGGAUUCCCAGACUGCCUACUUCGCGGUGGCCUACCAGGAGAAACUCCUCAUGCACGUGAUGAACUGUGCCACUGGCCAAACGAUUAGUAA
...((((((......((((...))))........))))))(((((((...(((((....(((((...)))))...((((((.....)).))))....)))))..)))..)))). ( -34.94)
>consensus
CGUGGCUGUAUCGUACCUCACUCAAAACUCCCAGUCAGCCUACUUUGCGGUGGCGUAUCAGAGCAAACUACUGCUUCACGUUAUGAAAUGCGCCACCGGCCAUACUAUCACCCA
...(((((...........................))))).......((((((((((((((((((......))))).......)))..))))))))))................ (-25.85 = -25.07 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:59 2006