Locus 3808

Sequence ID 2L_DroMel_CAF1
Location 11,124,161 – 11,124,258
Length 97
Max. P 0.515581
window6005

overview

Window 5

Location 11,124,161 – 11,124,258
Length 97
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 79.33
Mean single sequence MFE -27.38
Consensus MFE -19.85
Energy contribution -19.63
Covariance contribution -0.22
Combinations/Pair 1.36
Mean z-score -1.01
Structure conservation index 0.72
SVM decision value -0.04
SVM RNA-class probability 0.515581
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11124161 97 + 22407834
------GUUA--AAUUAGUUUCACAUGGCCACUGAUUUGCAGGCGGACAUACCAGGAUGUCCUGGAACUAUCAGAGGUUAGUUUGGACAUCUCCCUGCAGAGGAA
------...(--(((((((.((....))..))))))))(((((.((.....)).((((((((..((((((........)))))))))))))).)))))....... ( -28.90)
>DroSec_CAF1 3422 97 + 1
------GUUA--AAGCAGUUUCACAUGGCCACCGAUUUGCAGGCGGACAUACCAGGAUGUCCUCGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGCGGAA
------....--...................(((...((((((.(((....(((((.((.((((.........)))).)).)))))...))).)))))).))).. ( -31.40)
>DroSim_CAF1 3407 97 + 1
------GUUA--AAGCAGUUUCACAUGGCCACCGAUUUGCAGGCGGACAUACCAGGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGCGGAA
------....--...................(((...((((((.(((....(((((.((.(((.((....))..))).)).)))))...))).)))))).))).. ( -28.70)
>DroEre_CAF1 4189 97 + 1
------CUAA--ACAGAGUUUCACAUGACCACUUACCUGCAGGCGGGCAUACCAAGAUGUGCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCUCUGCAGAGGAA
------....--...((((.((....))..))))..(((((((.(((....(((((.((..((((.....))))....)).)))))....))))))))))..... ( -23.40)
>DroYak_CAF1 3483 97 + 1
------CCAA--ACAGAGUUUCACAUGGCCGCUCAUUUGCAGGCGGACAUACCAAGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCUCUGCAGAGGAA
------((..--.(((((......(((.(((((........))))).)))....((((((((.((.(((......)))...)).)))))))))))))....)).. ( -29.20)
>DroAna_CAF1 2867 103 + 1
AAAUUAAUUAUUAACCAUAUUCAUGUG--UGUUUCCCAAUAGGCGCACACAACAAGAUGUCCUGGAACUCGUGGAAAUCAGCUUGGAUAUCUCUCUUCAGAGGAA
..............((.......((((--(((...((....)).)))))))...((((((((.((..((.((....)).)))).)))))))).........)).. ( -22.70)
>consensus
______GUUA__AAACAGUUUCACAUGGCCACUGAUUUGCAGGCGGACAUACCAAGAUGUCCUGGAACUAUCAGAGGUCAGCUUGGACAUCUCCCUGCAGAGGAA
...............................(((..(((((((.((.....)).((((((((.((.(((......)))...)).)))))))).)))))))))).. (-19.85 = -19.63 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:58 2006