| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,121,193 – 11,121,306 |
| Length | 113 |
| Max. P | 0.548195 |
| Location | 11,121,193 – 11,121,306 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -34.47 |
| Consensus MFE | -22.86 |
| Energy contribution | -23.87 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548195 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11121193 113 - 22407834 CU-UUACAGCUUUUGUCGCAUUUUUAAGAACGAAGCCCGCAUUGUGCUGGUUAAGAAAGAGAAGGGCUUAUGGCCUGAGAUGUUCCAGAAGCUGGACAAGGAGGCACUCAUGCA ((-(..(((((((((..(((((((..((..((((((((...((...((.....))...))...)))))).))..)))))))))..)))))))))...)))...(((....))). ( -35.90) >DroVir_CAF1 494 106 - 1 --------GUUUCUGUCGCAUUUUCAAGCAUGAGGCGCGCAUUGUGCUUGUCAAGAAACAGGCCGGCAUCUGGCCGGAGCUCUUCCAGAAGCUGGACAAAGAGGCGUUGAUGCA --------((.((...(((.....((((((..(.(....).)..))))))..........((((((...))))))....(((((((((...)))))...)))))))..)).)). ( -33.80) >DroEre_CAF1 422 114 - 1 CUGUUACAGCUUCUGUCGCAUCUUCAAGAACGAAGCCCGCAUUGUGCUGGUGAAAAAAGAGAAGGGCAUGUGGCCUGAGAUGUUCCAGAAGCUGGACAAGGAGGCACUCAUGCA .((((.(((((((((..(((((((..........(((.((.....)).)))............((((.....)))))))))))..))))))))))))).....(((....))). ( -39.00) >DroYak_CAF1 452 114 - 1 UUGUUACAGCUUUUGUCGCAUCUUCAAGAACGAAGCCCGCAUUGUGCUGGUGAAAAAGGAGAAGGGUCUCUGGCCUGAGAUGUUUCAGAAGCUGGACAAGGAGGCACUCAUGCA (((((.(((((((((..(((((((..((..(...(((.((.....)).)))......(((((....))))))..)))))))))..))))))))))))))....(((....))). ( -37.10) >DroMoj_CAF1 501 106 - 1 --------GCUACUGUCGCAUCUUCAAGCACGAGGCGAGAAUUGUGCUCGUCAAAAAGCAUCUGGGAAUUUGGCCGGAACUGUUCCAGAAGCUGGACAAGGAGGCGUUGAUGAA --------......(((((..((((.(((((((........))))))).(((....(((.(((((((....(.......)..))))))).))).)))..))))..).))))... ( -31.50) >DroAna_CAF1 423 114 - 1 UUCUUACAGUUUUUGUCGCAUUUUUAAAAACGAAGCUCGUAUUGUGCUUGUUAAGAAGGAAAAAGGUCUGUGGCCGGAGAUGUUCCAGAAGCUGGACAAGGAAACACUCCUGCA ......(((((((((..((((((((...(((.((((.(.....).)))))))............(((.....)))))))))))..)))))))))....((((.....))))... ( -29.50) >consensus _U_UUACAGCUUCUGUCGCAUCUUCAAGAACGAAGCCCGCAUUGUGCUGGUCAAAAAAGAGAAGGGCAUCUGGCCGGAGAUGUUCCAGAAGCUGGACAAGGAGGCACUCAUGCA ......(((((((((..(((((((.........((((.((.....)).))))...........((((.....)))))))))))..))))))))).................... (-22.86 = -23.87 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:57 2006