| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,116,368 – 11,116,477 |
| Length | 109 |
| Max. P | 0.839687 |
| Location | 11,116,368 – 11,116,477 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 75.72 |
| Mean single sequence MFE | -31.02 |
| Consensus MFE | -20.26 |
| Energy contribution | -19.32 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839687 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11116368 109 - 22407834 AUACUAAACUUAAACU-----UACGUAGGGCUAUCCGUUCAUGGAGAGCUUGCGCUCCAAUCGCAUGCUGAUGUAUGCCAUCGGAGCCUCCGCUGCACUGGUCAUUCUUCUGUC .............(((-----...((((((((.((((....)))).))))...(((((.((.((((((....)))))).)).))))).....))))...)))............ ( -30.10) >DroVir_CAF1 13706 112 - 1 AUACUA--AUUAAACGUUUGCAUUUUAGGGACAUCCGUUUAUGGAAAGCCUGCGCGCCAAUCGUAUGCUAAUGUGCGCCAUUGGCGCCUCGGCUGCCUUGGUGCUAUUCCUCAC ......--...........(((((..(((....((((....)))).((((...(((((((((((((......)))))..))))))))...)))).))).))))).......... ( -33.80) >DroPse_CAF1 10445 106 - 1 AUCCUAUAUUUAA--------UUAACAGGGGCAUCCCUUCAUGGAGAGUCUGCGCUCCAAUCUCAUGCUGAUGUAUGCCAUUGGCGCCUCAGCCGCGUUGGUGCUGCUGUUAUC .............--------.((((((.((((((......(((((.(....).))))).......(((((.((..(((...))))).)))))......)))))).)))))).. ( -33.70) >DroEre_CAF1 9517 109 - 1 AUACUAAACUUAAGCU-----UACACAGGGUCAUCCAUUCAUGGAGAGCUUGCGCUCCAAUCGCAUGCUGAUGUACGCCAUCGGAGCUUCCGCUGCAUUGGUGAUUCUUCUGUC .((((((.....(((.-----....((((.((.((((....)))))).)))).(((((.((.((.(((....))).)).)).)))))....)))...))))))........... ( -30.30) >DroYak_CAF1 9556 109 - 1 AGACUAAACAUAAACA-----UUUACAGGGCCAUCCAUUCAUGGAGAGUUUGCGCUCCAAUCGCAUGCUGAUGUAUGCCAUCGGAGCUUCCGCUACAUUGGUGAUUCUUCUGUC .(((............-----......((.....))......(((((((....(((((.((.((((((....)))))).)).)))))...((((.....))))))))))).))) ( -28.50) >DroAna_CAF1 8959 107 - 1 UUA--AAAAUCUAUUU-----UUUUCAGGGACAUCCGUUCAUGGAGAGCUUGCGCUCCAAUCGUAUGUUAAUGUAUGCUAUCGGAGCAUCCGCCACCUUGGUGCUGCUCUUAUC ...--...........-----....((.((((....)))).))((((((..(((((((.((.(((((......))))).)).)))))....(((.....))))).))))))... ( -29.70) >consensus AUACUAAACUUAAACU_____UUUACAGGGACAUCCGUUCAUGGAGAGCUUGCGCUCCAAUCGCAUGCUGAUGUAUGCCAUCGGAGCCUCCGCUGCAUUGGUGAUUCUUCUGUC .........................((((....((((....))))...)))).(((((.((.((((((....)))))).)).)))))....(((.....)))............ (-20.26 = -19.32 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:55 2006