Locus 3803

Sequence ID 2L_DroMel_CAF1
Location 11,108,620 – 11,108,740
Length 120
Max. P 0.959465
window5998

overview

Window 8

Location 11,108,620 – 11,108,740
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.94
Mean single sequence MFE -32.15
Consensus MFE -20.00
Energy contribution -19.95
Covariance contribution -0.05
Combinations/Pair 1.65
Mean z-score -2.53
Structure conservation index 0.62
SVM decision value 1.50
SVM RNA-class probability 0.959465
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11108620 120 - 22407834
UUGAGGUACUCCUUCGCCUGAUCUAUUUCUCCCGCUUUUUUGGCCUCUAUAGCAGCUAGCUUAAACUCCUUUUGGCGCUCGAGGAGCAGUUUCAUUUGUUGCUCGGCAAUAUUAUUCUUC
..((((....)))).(((...............(((.....)))......(((.....)))............)))((.((((.(((((......))))).))))))............. ( -25.00)
>DroVir_CAF1 3212 120 - 1
UUUAGGUAUUCCUUGGCCUGAUCGAUUUCGCCCGCUUUUUUGGCUGCUAUGGCGGCCACUUUAAACUCCUUUUGCCGUUCGAGCAGCAAUUUCAUUUGUUGCUCCGCCAGAUUACUCUUC
....((((.((..((((..((.((.....(....).....(((((((....))))))).................)).))(((((((((......))))))))).)))))).)))).... ( -34.30)
>DroGri_CAF1 3253 120 - 1
CUAAGGUAUUCCUUGGCCUGAUCAAUUUCACCAGCUUUCUUGGCUGCUACAGCGGCAAUUUUGAACUCCUUUUGUCGCUCGAGCAGUAAUUUCAUUUGCUGCUCCGCCAAAUUGCUCUUU
((((((....))))))..(((......)))..(((....(((((......((((((((.............)))))))).(((((((((......))))))))).)))))...))).... ( -37.72)
>DroWil_CAF1 1566 120 - 1
UUCAGAUAUUCCUUAGCCUGAUCGAUUUCGCCCGCCUUUUUGGCUGCUAUGGCAGCUACUUUGAAUUCCUUUUGGCGUUCCAAUAAGAGUUUCAUUUGUUGUUCGGCCAGAUUACUCUUC
.((((.((.....))..))))..(((((.(((((((....(((((((....)))))))....(((.....)))))))...(((((((.......)))))))...))).)))))....... ( -26.10)
>DroMoj_CAF1 1617 120 - 1
UUUAGAUAUUCCUUGGCUUGAUCGAUCUCGCCCGCUUUCUUUGCGGCUAGGGCCGCCAGUUUAAACUCCCUUUGGCGCUCGAGCAAUAAUUUCAUUUGUUGCUCAGCUAGAUUGCUUUUC
......................((((((.((((((.......))))...((((.(((((............)))))))))(((((((((......))))))))).)).))))))...... ( -36.20)
>DroAna_CAF1 1549 120 - 1
UUCAAGUACUCCUUGGCUUGGUCAAUCUCCCCAGCUUUCUUUGCGUCUAUUGCAGCCAUCUUGAACUCCUUUUGACGUUCCAGCAGCAGCUUCAUCUGCUGCUCGGCAAGGUUGCUCUUU
....((((..((((((((.((........)).)))).....((((.....))))(((.....((((((.....)).)))).((((((((......)))))))).))))))).)))).... ( -33.60)
>consensus
UUCAGGUAUUCCUUGGCCUGAUCGAUUUCGCCCGCUUUCUUGGCUGCUAUGGCAGCCACUUUAAACUCCUUUUGGCGCUCGAGCAGCAAUUUCAUUUGUUGCUCGGCCAGAUUACUCUUC
.((((((........))))))............(((......(((((....)))))........................(((((((((......))))))))))))............. (-20.00 = -19.95 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:51 2006