Locus 3802

Sequence ID 2L_DroMel_CAF1
Location 11,108,169 – 11,108,259
Length 90
Max. P 0.938491
window5997

overview

Window 7

Location 11,108,169 – 11,108,259
Length 90
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 80.80
Mean single sequence MFE -36.78
Consensus MFE -20.78
Energy contribution -21.70
Covariance contribution 0.92
Combinations/Pair 1.36
Mean z-score -3.08
Structure conservation index 0.56
SVM decision value 1.27
SVM RNA-class probability 0.938491
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11108169 90 - 22407834
CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUAGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGCAGUAG
......((((((.(((((((.....((((((((((((..(((((........)))))..))))))))))))))))))).)))------)))..... ( -44.10)
>DroSec_CAF1 1104 90 - 1
CUAAACGUUGCUGGAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGGAGUAG
....((.(((((..((((((.....((((((((((((..(((((........)))))..))))))))))))))))))..)))------))..)).. ( -36.20)
>DroSim_CAF1 1106 90 - 1
CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGUUCUGGGGC------AGGAGUAG
....((.(((((.(((((((.....((((((((((((..(((((........)))))..))))))))))))))))))).)))------))..)).. ( -40.80)
>DroEre_CAF1 1105 90 - 1
CUAAGCGUUGCUGCAGAGCCUCCAACAUAUUUGUUGGAGCUGUUGGGACCGGAGUAGGCACAACAGGUGUGGGAUCUGGAAU------AGGAGCAG
........((((.(..(((.(((((((....)))))))))).......(((((....((((.....))))....)))))...------.).)))). ( -30.10)
>DroYak_CAF1 1094 90 - 1
CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUGGCAGCUGUUGGAACGGGUGCUGGAGCAACAGGUGUGGGAUCUGGGGC------AGGAGUAG
....((.(((((.((((...(((.((((..((((((((.((((....)))).))))...))))...)))).))))))).)))------))..)).. ( -30.70)
>DroAna_CAF1 1083 96 - 1
CCAAACGCUGUUGCAGGGCUUCCAGUAUAGUAGAAGCUGUUGGUGGUACCGCUGCUGGAGGAGCUGGGGCGGGAGCUGGAGCUGGCGCGGCAGGAG
.......(((((((....(((((((((((((....))))).((((....))))))))))))((((..(((....)))..))))...)))))))... ( -38.80)
>consensus
CUAAACGUUGCUGCAGAGCCUCCAACAUAUUUGUUGCAGCUGCUGGAACAGGAGCAGGAGCAACAGGUGUGGGAUCUGGGGC______AGGAGUAG
((.......(((.((((.((.....((((((((((((..(((((........)))))..)))))))))))))).)))).)))......))...... (-20.78 = -21.70 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:50 2006