| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,105,311 – 11,105,431 |
| Length | 120 |
| Max. P | 0.575824 |
| Location | 11,105,311 – 11,105,431 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.17 |
| Mean single sequence MFE | -47.88 |
| Consensus MFE | -33.75 |
| Energy contribution | -34.78 |
| Covariance contribution | 1.04 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11105311 120 - 22407834 CCUUGGGCGCAGGACACCCUCUGGCAGGGUUUGCUGGGCGACGAGCAUCGCCAGCUGCUAGGCACGGAGGAAGAGUCUUCCGAUCGCCACAGCAGCGACGACGAUGACAACGAGAGCGAA .((((.((.(((.(.(((((.....))))).).))).)).....(((((((..((((((.(((.(((((((....)))))))...)))..))))))...).))))).)..))))...... ( -49.00) >DroVir_CAF1 14982 120 - 1 CCCUGGGCACAGGAUACGUUGUGGCAGGGCUUGCUCGGUGAUGAGCAUCGCCAGCUUCUGGGCACCGAGGAGGAGUCCUCGGAUCGUCACAGCAGCGACGAUGAUGACAACGAAAGCGAA .((((....))))...((((((.(((.(((.((((((....))))))..))).(((.((((((.(((((((....)))))))...))).))).))).....)).).))))))........ ( -48.70) >DroGri_CAF1 9623 120 - 1 CCCUGGGCACAGGAUACACUGUGGCAGGGCCUGCUCGGUGAUGAGCAUCGCCAACUAUUGGGCACCGAGGAGGAGUCGUCGGAUCGUCACAGUAGCGACGAUGACGACAACGAAAGCGAA ((((.(.(((((......))))).)))))(((.(((((((((....)))(((........))))))))).))).((((((..((((((.(....).))))))))))))..(....).... ( -53.80) >DroWil_CAF1 9989 120 - 1 CCCUGGGCCCAGGAUGCUCUGUGGCAAGGCCUUUUGGGCGAUGAGCAUCGUCAGUUGCUGGGCACCGAAGAGGAAUCCUCGGAUCGGCAUAGCAGUGAUGAUGAGGACAAUGAGAACGAA .(((..((((((((.((.((......)))).))))))))......((((((((.((((((....((((.((((...))))...))))..))))))))))))))))).............. ( -45.20) >DroMoj_CAF1 9317 120 - 1 CCUUGGGCACAGGAUACGCUGUGGCAAGGGCUGCUAGGAGAUGAGCACCGCCAGCUGCUGGGCACCGAGGAGGAGUCUUCCGAUCGCCACAGCAGCGAUGAUGAGGACAACGAAAGUGAA ((((.(.(((((......))))).)...(((((((........))))..))).((((((((((.....(((((...)))))....))).)))))))......))))...((....))... ( -45.70) >DroAna_CAF1 8057 120 - 1 CCUUGGGCCCAGGACACUCUGUGGCACGGCUUGCUGGGCGACGAGCACCGCCAACUGCUGGGCACCGAAGAGGAGUCUUCGGACCGUCACAGCAGCGACGACGAAGAAAACGAAAACGAA .(((.((((((((....)))).)))..(((.((((.(....).))))..)))..(((((((((.(((((((....)))))))...))).))))))......).))).............. ( -44.90) >consensus CCCUGGGCACAGGAUACGCUGUGGCAGGGCCUGCUGGGCGAUGAGCAUCGCCAGCUGCUGGGCACCGAGGAGGAGUCUUCGGAUCGUCACAGCAGCGACGAUGAGGACAACGAAAGCGAA ((((.(.(((((......))))).)))))..((((.((((((....)))))).((((((((((.(((((((....)))))))...))).)))))))..................)))).. (-33.75 = -34.78 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:49 2006