Locus 380

Sequence ID 2L_DroMel_CAF1
Location 1,192,418 – 1,192,538
Length 120
Max. P 0.592337
window601

overview

Window 1

Location 1,192,418 – 1,192,538
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.67
Mean single sequence MFE -44.37
Consensus MFE -27.30
Energy contribution -26.17
Covariance contribution -1.13
Combinations/Pair 1.47
Mean z-score -2.65
Structure conservation index 0.62
SVM decision value 0.12
SVM RNA-class probability 0.592337
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1192418 120 - 22407834
AAUGUCGGCGGGAAUUUUUCCGGGCGCCUGGUCGCCCUCCUUCUGGAAGGUGACCUUGGUGCCGGACUUCCAGCCGGGCUUGAUGGAUAUCGCCAGGAACUUCUCCUCCUUGCGGGAACU
....(((((.((((....(((((.((((.(((((((.(((....))).)))))))..))))))))).)))).)))))............((((.((((........)))).))))..... ( -55.20)
>DroVir_CAF1 13454 120 - 1
AAUAUCCGCUGGUAUUUUGCCGGGCGCCUGAUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGUUUAAUAGAUAUUUGCAGGACUUUGUCCUCCUUCUUGGAGCU
...(((((((((........((((((((.((((((..(((....)))..)))).)).))))))))....)))).))))).............((.((((...))))(((.....))))). ( -42.90)
>DroGri_CAF1 10184 120 - 1
AAUAUCCGCUGGUAUUUUGCCGGGCGCCUGGUCGCCUUCCUUUUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGCUUAAUAGAUAUUUGCAGGACUUUGUCCUCCUUCUUGGAGCU
.....(((((((........((((((((.((((((.((((....)))).))))))..))))))))....)))).)))((((...(((.....(.(((((...))))).).)))..)))). ( -50.80)
>DroWil_CAF1 19545 120 - 1
AAUAUCCGCUGGUAUUUUACCGGGUGCUUGAUCACCUUCCUUUUGGAAGGUGACUUUGGUGCCAGAUUUCCAACCGGGCUUAAUUGAUAUCUGUAGAACUUUAUCUUCCUUCUUGGAGCU
.......(((((((...)))))((..((.(((((((((((....))))))))).)).))..)).....(((((..(((.......((((...(.....)..))))..)))..))))))). ( -35.10)
>DroMoj_CAF1 10831 120 - 1
AAUAUCCGCGGGUAUUUUGCCGGGCGCCUGGUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCUGAUUUCCAGCCGGGUUUAAUAGAUAUUUGCAGGACUUUAUCCUCCUUUUUCGAGCU
....(((((((((((((...((((((((.((((((..(((....)))..))))))..))))))))...(((....)))......)))))))))).))).......(((.......))).. ( -39.90)
>DroAna_CAF1 8550 120 - 1
UAUGUCGGCGGGGAUUUUUCCUGGCCCCUGAUCGCCCUCCUUUUGGAAGGUGACCUUGGUCCCGGACUUCCAGCCUGGCUUGAUGGAUAUCUGAAGGGUCUUGUCCUCUUUGCGGGAGCU
......(((.((((....)))).))).....(((((.(((....))).)))))....(.(((((((..((((..(......).))))..)).((((((......)).)))).))))).). ( -42.30)
>consensus
AAUAUCCGCGGGUAUUUUGCCGGGCGCCUGAUCGCCCUCCUUCUGGAACGUGACUUUGGUGCCCGAUUUCCAGCCGGGCUUAAUAGAUAUCUGCAGGACUUUGUCCUCCUUCUUGGAGCU
...(((....((((...))))(((((((.((((((..(((....)))..)))).)).))))))))))((((((..(((................((((.....)))))))..)))))).. (-27.30 = -26.17 +  -1.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:28 2006