| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,103,055 – 11,103,158 |
| Length | 103 |
| Max. P | 0.745961 |
| Location | 11,103,055 – 11,103,158 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 85.21 |
| Mean single sequence MFE | -51.47 |
| Consensus MFE | -37.28 |
| Energy contribution | -38.07 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.17 |
| Mean z-score | -3.01 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.745961 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11103055 103 + 22407834 GAAGGCAGAAACGCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAGGAGUGUAGCUGC ....((((....(((((.((.(------(((.....(((((...)))))((.((((((((((((((((....)))))))))))))))).)))))))).)))))..)))) ( -55.10) >DroSec_CAF1 6285 103 + 1 GAACGCAGAAACUCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAUGAGUGUAGCUGC ....((((..(((((.((((((------(((..(.(((......)))..)..)))((((.(((..(((((...)))))..))).)))).)))))).)))))....)))) ( -53.80) >DroSim_CAF1 6536 103 + 1 GAAAGCAGAAACUCGCUGCUGU------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCUGCCGGCGGCAAGGAGUGUAGCUGC ....((((.....((((.((.(------(((.....(((((...)))))((.((((((((((((((((....)))))))))))))))).)))))))).))))...)))) ( -53.90) >DroEre_CAF1 6384 103 + 1 GAAGGCAGAAAUACGCUGCUGA------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGCGGUGCGGUCGGCGGCAAGGAGUGAAGCUGC ....((((...(((((((((..------(((..(.(((......)))..)..)))(((..((((((((((...))))))))))..))))))))).....)))...)))) ( -46.60) >DroYak_CAF1 6272 103 + 1 GAAGGCGGAAACACGCUGCUGA------GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGCGGAGCGGCCGGCGGCAAGGAGUGAAGCUGC ...((((....)..((((((..------(((..(.(((......)))..)..)))(((..(.((((((((...)))))))).)..)))))))))..........))).. ( -46.50) >DroPer_CAF1 6565 103 + 1 AAAGGCUGAUACCCGCUGCUGCGUUUGGGUCUGCUGCAGUGUAAUCCGUGUCGGAGGCAC-ACCGC---C--AGGCGGUGGCUGGGCCGGCGGCAGCGAGUGCAGCUGC ...(((((.(((.(((((((((....((((.(((......)))))))....(((.(((.(-(((((---.--..)))))))))...)))))))))))).)))))))).. ( -52.90) >consensus GAAGGCAGAAACACGCUGCUGU______GCCUGCUGAAGAGUGAUUCUUGUGGGCGGCACCACUGCUGCCUGUGGCGGUGGUGCGGCCGGCGGCAAGGAGUGUAGCUGC ....((((..((.(((((((........((((((.(((......)))..))))))(((..((((((((((...))))))))))..)))))))))...).))....)))) (-37.28 = -38.07 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:39 2006