Locus 3794

Sequence ID 2L_DroMel_CAF1
Location 11,095,923 – 11,096,036
Length 113
Max. P 0.814580
window5983

overview

Window 3

Location 11,095,923 – 11,096,036
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.12
Mean single sequence MFE -29.10
Consensus MFE -20.32
Energy contribution -19.68
Covariance contribution -0.63
Combinations/Pair 1.40
Mean z-score -1.17
Structure conservation index 0.70
SVM decision value 0.66
SVM RNA-class probability 0.814580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11095923 113 + 22407834
UUGU-----UACUUGUUUAGUUCUC--CUAGCUCACCUCUGCUUAAGCUCAUUGUGAUUGGUCAUGUCAGCGGAUAUUUGCUGAAUGAGCGACAGUAGAACCUUUUGCUCCAGUCUGCAU
.(((-----..((..((((((..((--(.(((........)))...(((...(((((....)))))..)))))).....))))))..))..)))(((((..............))))).. ( -26.34)
>DroVir_CAF1 5326 110 + 1
AAGUGCUUGCAU-------CC-GUU--UAUCCUUACCUCUGUUUAAGCUCAUUAUGGUUGCUCAUGUCCGCUGAUAUUUGCUGAAUGAGUGAGAGCAGCACCUUUUGCUCCAGCCGACAA
........(((.-------((-((.--....((((........))))......)))).)))...((((.((((....(..((.....))..)((((((......)))))))))).)))). ( -26.90)
>DroPse_CAF1 5277 105 + 1
UCGG-----AAU-------CA-AUC--CAAUCCUACCUCUGUUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGGACUUUCUGCUCUAGCCUGCAU
..((-----(..-------..-.))--).......((((((((...(((((((((((....)))))(((((((....)))))))))))))))))).)))......(((........))). ( -29.50)
>DroEre_CAF1 4359 115 + 1
UGGC-----CACUUAUUUAGUUCUCUUUUAGCUCACCUCUGCUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAUAUUUGCUGAAUGAGCGACAGUAGAACCUUUUGUUCCAGUCUGCAC
((((-----((.((((........(((..(((........))).)))......)))).)))))).....((((((..(((((.....))))).....((((.....))))..)))))).. ( -25.34)
>DroAna_CAF1 4248 104 + 1
UGGC-----AGA-------AAACU---CU-ACCCACUUUUGCUUAAGCUCAUUGUGGUUGCUCAUAUCCGCUGAGAUUUGCUGGAUGAGCGAGAGGAGCACCUUCUGCUCCAGCCGGCAG
.(((-----...-------...((---(.-..((((....((....)).....))))..(((((..(((((........)).))))))))))).((((((.....)))))).)))..... ( -37.00)
>DroPer_CAF1 4696 105 + 1
UCGG-----AAU-------CA-AUC--CAAUCCUACCUCUGUUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGGACUUUCUGCUCUAGCCUGCAU
..((-----(..-------..-.))--).......((((((((...(((((((((((....)))))(((((((....)))))))))))))))))).)))......(((........))). ( -29.50)
>consensus
UCGC_____AAU_______CA_CUC__CAAGCCCACCUCUGCUUAAGCUCAUUAUGAUUGGUCAUGUCAGCGGAGAUUUGCUGAAUGAGCGACAGCAGAACCUUCUGCUCCAGCCUGCAU
.....................................((((((...(((((((((((....)))))(((((........)))))))))))...))))))......(((........))). (-20.32 = -19.68 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:31 2006