Locus 3787

Sequence ID	2L_DroMel_CAF1
Location	11,059,902 – 11,060,036
Length	134
Max. P	0.883457

overview

Window 7

Location	11,059,902 – 11,060,021
Length	119
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	95.92
Mean single sequence MFE	-27.12
Consensus MFE	-25.24
Energy contribution	-25.76
Covariance contribution	0.52
Combinations/Pair	1.06
Mean z-score	-1.35
Structure conservation index	0.93
SVM decision value	0.93
SVM RNA-class probability	0.883457
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11059902 119 - 22407834
UUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCA-UCUGAAAUGUGUCAAAAACAACAGUGGGCUAACACUUGUGUCUGAACUGAAAUACAUAUCAAGUCGGGUU
.((((((((..........((.(..((.....))..).))..((((.((-.(((...(((.......))).))))).)))).))))))))(((((..(((........)))..))))).. ( -27.90)
>DroSec_CAF1 48600 120 - 1
UUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAAAAGUGGGCUAACACUUGUGUCUGAACUGAAAUACAUAUCAAGUCGGGUU
.((((((((.........((..((((((..((((((.((.....)).))).))).....))))))..))...((....))..))))))))(((((..(((........)))..))))).. ( -28.20)
>DroSim_CAF1 48750 120 - 1
UUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCUAACACUUGUGUCUGAACUGAAAUACAUAUCAAGUCGGCUU
.((((((((.........((..((((((..((((((.((.....)).))).))).....))))))..))...((....))..)))))))).((((..(((........)))..))))... ( -26.90)
>DroEre_CAF1 51074 120 - 1
UUACAAGUGCAAUAAAGUGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCUAACACUUGUGUCUAGGCUGAAAAACAUAUCAAGUCGGGUU
.((((((((........(((..((((((..((((((.((.....)).))).))).....))))))..)))..((....))..))))))))....((((((........)).))))..... ( -26.80)
>DroYak_CAF1 50766 119 - 1
UUACAAGUGCAAUAAAA-GUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCUAACACUUGUGCCUAAGCUGAAAAACAUAUCAAGUCGGGUU
..(((((((........-((..((((((..((((((.((.....)).))).))).....))))))..))...((....))..)))))))(((..(..(((........)))..)..))). ( -25.80)
>consensus
UUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCUAACACUUGUGUCUGAACUGAAAUACAUAUCAAGUCGGGUU
.((((((((.........((..((((((..((((((.((.....)).))).))).....))))))..))...((....))..))))))))(((((..(((........)))..))))).. (-25.24 = -25.76 +   0.52)

alignment

secondary structure

dotplot

Window 8

Location	11,059,942 – 11,060,036
Length	94
Sequences	5
Columns	95
Reading direction	reverse
Mean pairwise identity	97.16
Mean single sequence MFE	-21.16
Consensus MFE	-20.10
Energy contribution	-20.70
Covariance contribution	0.60
Combinations/Pair	1.00
Mean z-score	-1.30
Structure conservation index	0.95
SVM decision value	0.73
SVM RNA-class probability	0.834314
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11059942 94 - 22407834
UGAUUUAUUGCUGCUUUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCA-UCUGAAAUGUGUCAAAAACAACAGUGGGCU
...((((((((.(((.....)))))))))))..((..((((((..(((.((.((.....)).))-.))).....))))))..))........... ( -22.10)
>DroSec_CAF1 48640 95 - 1
UGAUUUACUGCUGCUUUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAAAAGUGGGCU
.......(..((((.........))........((..((((((..((((((.((.....)).))).))).....))))))..))...))..)... ( -19.20)
>DroSim_CAF1 48790 95 - 1
UGAUUUAUUGCUGCUUUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCU
...((((((((.(((.....)))))))))))..((..((((((..((((((.((.....)).))).))).....))))))..))........... ( -22.40)
>DroEre_CAF1 51114 95 - 1
UGAUUUAUUGCUGCUUUACAAGUGCAAUAAAGUGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCU
...((((((((.(((.....))))))))))).(((..((((((..((((((.((.....)).))).))).....))))))..))).......... ( -23.10)
>DroYak_CAF1 50806 94 - 1
UGAUUUAUCGCUGCUUUACAAGUGCAAUAAAA-GUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCU
.......(((((((.........)).......-((..((((((..((((((.((.....)).))).))).....))))))..))...)))))... ( -19.00)
>consensus
UGAUUUAUUGCUGCUUUACAAGUGCAAUAAAAAGUGGUUGACAAGUAGUUGGGCAAAUAGUGCAAUCUGAAAUGUGUCAAAAACAACAGUGGGCU
...((((((((.(((.....)))))))))))..((..((((((..((((((.((.....)).))).))).....))))))..))........... (-20.10 = -20.70 +   0.60)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:14 2006