Locus 3785

Sequence ID 2L_DroMel_CAF1
Location 11,057,467 – 11,057,568
Length 101
Max. P 0.500000
window5964

overview

Window 4

Location 11,057,467 – 11,057,568
Length 101
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 61.14
Mean single sequence MFE -24.75
Consensus MFE -9.39
Energy contribution -11.95
Covariance contribution 2.56
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.38
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11057467 101 + 22407834
GCAAGUUCGAGAGAGCAUGAGAGCGCUCCCCAACAAAUAAGAAAACAAAACGGGAA-AAAAGA-AUUAGUCAUCGCGCCGAUGGCUUAAUACUCUCAAAAAAA------------
....((((....)))).((((((...((((.....................)))).-......-(((((((((((...))))))).)))).))))))......------------ ( -25.40)
>DroEre_CAF1 48407 102 + 1
GUAAGUUCGAGAGAGCAUGAGAGCGCCCCCCAACAAAUAAGAAAACAAAACGGGAAUGAAAGA-AUUAGACGUCACGCCGACGUCCCAAUACUCUCGGCAAAU------------
((..((((....)))).((((((.....(((....................))).........-....((((((.....))))))......))))))))....------------ ( -24.25)
>DroAna_CAF1 50569 101 + 1
C-------GA--GCGC-CGAGAGCGU-CCCCAACAAAUAAG---ACAAAACGAGUAUGGAAAAUAUACUUCAGCAAGUCGAAGUUUGUACACUCUUUCUGGGUGACCCUUUCCUA
.-------..--....-.(((((.((-(((((((((((..(---((.....(((((((.....)))))))......)))...))))))..........)))).))).)))))... ( -24.60)
>consensus
G_AAGUUCGAGAGAGCAUGAGAGCGC_CCCCAACAAAUAAGAAAACAAAACGGGAAUGAAAGA_AUUAGUCAUCACGCCGAAGUCUCAAUACUCUCAAAAAAU____________
....((((....)))).((((((.....(((....................)))..............((((((.....))))))......)))))).................. ( -9.39 = -11.95 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:10 2006