Locus 3784

Sequence ID 2L_DroMel_CAF1
Location 11,054,795 – 11,054,891
Length 96
Max. P 0.701763
window5963

overview

Window 3

Location 11,054,795 – 11,054,891
Length 96
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 84.45
Mean single sequence MFE -24.18
Consensus MFE -18.74
Energy contribution -19.14
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.78
SVM decision value 0.35
SVM RNA-class probability 0.701763
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11054795 96 - 22407834
UUAACUUUAUAGUGUGCUCUCUAUUUUUUUUUUUCGGGCUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC
........((((.(....).))))............((((....((((((((....--..))).)))))))))(((((((((....)))))))))... ( -24.30)
>DroSec_CAF1 43267 81 - 1
UUUACUUGAUAGUUUA-----UAUUU------------CUUAUAUUUCGUACUGGACACUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC
.....(((((((((((-----((...------------..))))..(((((.(((.((.((.(((....))))).)).))).))))).))))))))). ( -21.50)
>DroSim_CAF1 43382 79 - 1
UUUACUUGAUAGUGUA-----UAUUU------------CUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGCUGGCUGUCAAC
.....(((((((((((-----((...------------..)))))...(((((((.--(((((((....)))..)))))))..))))..)))))))). ( -24.00)
>DroEre_CAF1 45770 91 - 1
UUUACUUGAUAUUGUGCUCUCUAUUU-----UUUCGGGCUUAUAUUUCGUACUGGA--CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC
..(((..(((((...((((.......-----....))))..)))))..))).....--..(.(((....))))(((((((((....)))))))))... ( -27.80)
>DroYak_CAF1 45333 91 - 1
UUUACUUGAUAUUGUGCUCUCUAUUU-----UUUCGGGCUUAAAUUUCGUACUGGA--CUGAGCCGAAAGGCCGUUGGCCAUUGUAGUGGCUGUCAAC
.......((.(((..((((.......-----....))))...))).))......((--(.(.(((....))))...((((((....)))))))))... ( -23.30)
>consensus
UUUACUUGAUAGUGUGCUCUCUAUUU_____UUUCGGGCUUAUAUUUCGUACUGGA__CUGUGCCGAAAGGCCGAUGGCCAUUGUGGUGGCUGUCAAC
............................................................(.(((....))))(((((((((....)))))))))... (-18.74 = -19.14 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:09 2006