Locus 3781

Sequence ID 2L_DroMel_CAF1
Location 11,050,672 – 11,050,767
Length 95
Max. P 0.795456
window5958

overview

Window 8

Location 11,050,672 – 11,050,767
Length 95
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 77.83
Mean single sequence MFE -13.78
Consensus MFE -2.60
Energy contribution -4.60
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.19
SVM decision value 0.60
SVM RNA-class probability 0.795456
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11050672 95 + 22407834
AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAACAACGACAGCAGCAAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG
.((.(((..((((((.......(((((...........-..................))))).....((((...--....-.)))-)))))))))).)). ( -17.15)
>DroSec_CAF1 39099 83 + 1
AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAAC------------AAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG
.((.(((..((((((.......((((............-.))))......------------.....((((...--....-.)))-)))))))))).)). ( -14.22)
>DroSim_CAF1 39172 83 + 1
AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAAC------------AAACAGGCAACC--CCAA-AUGC-CAUUAACUUGUACG
.((.(((..((((((.......((((............-.))))......------------.....((((...--....-.)))-)))))))))).)). ( -14.22)
>DroEre_CAF1 41290 97 + 1
AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA-ACAGCAACAACAACGACAACAGCGAACAGCUAUCCCUCCAA-AUGC-CAUUAACUUGUUCG
.(..(((..(((((((......((((............-.))))...............(((.....)))..........-....-))))))))))..). ( -13.32)
>DroMoj_CAF1 50827 83 + 1
AGUUCAAUUGUUAAUGUAAAAAGCUUUACAAACGCAACCACA---GUAAC---------A-CGCACAGACAUGC---CUACAUACACAAACAAUU-UACG
.((..(((((((..((((....((.........)).......---(((..---------.-.(((......)))---.))).))))..)))))))-.)). ( -10.00)
>consensus
AGUUCAAUUGUUAAUGUAAAAAGCUGCACACACACUUA_ACAGCAACAAC_________A_CAAACAGGCAACC__CCAA_AUGC_CAUUAACUUGUACG
.((.(((..(((((((......((((..............)))).......................(....).............)))))))))).)). ( -2.60 =  -4.60 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006