Locus 3779

Sequence ID 2L_DroMel_CAF1
Location 11,036,537 – 11,036,630
Length 93
Max. P 0.672285
window5955

overview

Window 5

Location 11,036,537 – 11,036,630
Length 93
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 83.71
Mean single sequence MFE -25.40
Consensus MFE -19.58
Energy contribution -20.47
Covariance contribution 0.89
Combinations/Pair 1.09
Mean z-score -1.88
Structure conservation index 0.77
SVM decision value 0.29
SVM RNA-class probability 0.672285
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11036537 93 - 22407834
---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACGAUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
---------------------..(((((.............)))))......(((((((((((.((((....((((.........))))....)))).))))))....))))). ( -25.42)
>DroPse_CAF1 40859 114 - 1
CUGGGCAAGACACCUCAAGUGUCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAGCAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
....(((((((((.....)))))(((((.............)))))......)))).((((((.((((....((((.........))))....)))).)))))).......... ( -32.42)
>DroGri_CAF1 28941 93 - 1
---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
---------------------..(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. ( -24.02)
>DroWil_CAF1 22841 84 - 1
---------------------ACACCUCGAUAAUUAGCUUAAGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGGGG---------
---------------------...((((((.((.(((((((((.(((.((((..((.........))..)))))))...)).))))))).))......)))))).--------- ( -14.10)
>DroMoj_CAF1 32010 93 - 1
---------------------UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAACGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
---------------------..(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. ( -24.02)
>DroPer_CAF1 40663 114 - 1
CUGGGCAAGACACCUCAAGUGUCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
....(((((((((.....)))))(((((.............)))))......)))).((((((.((((....((((.........))))....)))).)))))).......... ( -32.42)
>consensus
_____________________UCACCCCGAUAAUUAGCUUAGGGGUUCAACAUUGCAGGUCAAUGGUUUUGUUAACAUAUUAUAAGUUAUUUUAACCUUUGGCCGAUUUGCAUG
.......................(((((.............))))).......((((((((((.((((....((((.........))))....)))).))))))....)))).. (-19.58 = -20.47 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:58 2006