Locus 3773

Sequence ID 2L_DroMel_CAF1
Location 11,011,241 – 11,011,360
Length 119
Max. P 0.928913
window5947

overview

Window 7

Location 11,011,241 – 11,011,360
Length 119
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -26.90
Consensus MFE -23.71
Energy contribution -23.02
Covariance contribution -0.69
Combinations/Pair 1.17
Mean z-score -1.75
Structure conservation index 0.88
SVM decision value 1.19
SVM RNA-class probability 0.928913
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11011241 119 + 22407834
UUUAGAAAUGCAAAGCUGACUUAAGAUUU-UUUGGUAGAUUUUCGGCGAUUUGUACUUUUGGUAUCUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUGUGUUAAACCGCGUUAUUU
....(((((((((.(((((....((((((-......)))))))))))...)))))...(((((..(((.((....)).)))...))))).)))).(((((.((.....)).))))).... ( -25.60)
>DroSec_CAF1 5994 103 + 1
----------------AGAUUUCAGAUUU-UUUGGUAGAUUUUCGGUGACUUGUACUUUCAGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUUAACCGCGUCAUUU
----------------........((...-.((((..(((((((((((....((((.....)))).......)))))))))))..))))...)).(((((...........))))).... ( -28.90)
>DroSim_CAF1 6516 104 + 1
----------------AGAUUCUAGAUUUUUUUGGUAGAUUUUCGGCGACUUGUACUUUCGGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUUAACCGCGUCAUUU
----------------...............((((..(((((((((.(....((((.....)))).......).)))))))))..))))......(((((...........))))).... ( -24.70)
>DroYak_CAF1 6106 119 + 1
UUUUGUAAUACAAAGCAUAUUUAAGAUUU-UUUGGUAGAUUUCUGGCGAUUUGUACUUUAGGUAUUUUUCAGCACUAGAAGUCCGCCAGUUUGCCGACGCUUUGUUAAACCGCGCCAUUU
....((...(((((((.............-..(((..(((((((((.(....((((.....)))).......).)))))))))..)))(((....))))))))))...)).......... ( -28.40)
>consensus
________________AGAUUUAAGAUUU_UUUGGUAGAUUUUCGGCGACUUGUACUUUCGGUAUUUUGCAACACUGGAAGUCCGCCAAUUUUCCGACGCUCUAUUAAACCGCGUCAUUU
...............................((((..(((((((((.(....((((.....)))).......).)))))))))..))))......(((((...........))))).... (-23.71 = -23.02 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006