| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,987,237 – 10,987,328 |
| Length | 91 |
| Max. P | 0.592764 |
| Location | 10,987,237 – 10,987,328 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 79.07 |
| Mean single sequence MFE | -24.03 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.58 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592764 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10987237 91 + 22407834 AGU-UUACAUACCGGCCCAUCACCACUACCUCGGGAAGUAGAGGAAUCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.........((.......))........((((....(((((....)))------)).....(((((((....))))))).)))).......... ( -24.30) >DroSec_CAF1 4876 91 + 1 UGU-UUACAUACCGGCCCAUCACCACUUCCUCGAGAAGUAGAGGAACCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.........(((..........((((((........))))))......------.......(((((((....)))))))))).(((.....))) ( -23.70) >DroSim_CAF1 4715 91 + 1 UGU-UAACAUACCGGUCCAUCACCACUUCCUCGAGGAGUAGAGGAAUCAUCU------UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG ..(-((((.....(((.....)))..((((((........))))))......------..)))))(((((((....)))))))....(((.....))) ( -27.40) >DroEre_CAF1 6630 91 + 1 AAU-GUACAUACCGGUCCAUCACAACUUCCUCCGGAAUUAGAGGGCUCUUCU------UUGUUAAGUGGGCGCCUGCGUCCACGUCCCUGAUCAUCAG ...-.......((((................)))).(((((.((((.(....------..)....(((((((....))))))))))))))))...... ( -24.19) >DroWil_CAF1 3209 98 + 1 AAUAUUACUUACCGGCUCUUCAGCUCGCUUUCGUCCUUCAUCAGAAUCAUCGGAAUUCCUGCUAUAUGGACGCCUGCGUCCGCGUUCCUGAUCAUCCG ............(((....((((..((((((((...(((....)))....)))))............(((((....))))))))...))))....))) ( -23.00) >DroYak_CAF1 4238 91 + 1 UGU-CUACAUACCGGCCCAUCAUCACUUCCUCGGGAAUUGGAGGGUUCUUCU------UCGUUAAGUGGACGCCUGCGUCCUCGACCCUGAUCAUCAG .((-(........(((((..((....((((...)))).))..))))).....------.......(.(((((....))))).)))).(((.....))) ( -21.60) >consensus AGU_UUACAUACCGGCCCAUCACCACUUCCUCGGGAAGUAGAGGAAUCAUCU______UCGUUAAGUGGACGCCUGCGUCCACGUCCCUGAUCAUCAG .............((..(..........((((........)))).....................(((((((....))))))))..)).......... (-17.58 = -17.58 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:45 2006