Locus 3764

Sequence ID	2L_DroMel_CAF1
Location	10,963,139 – 10,963,231
Length	92
Max. P	0.677112

overview

Window 5

Location	10,963,139 – 10,963,231
Length	92
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	80.50
Mean single sequence MFE	-17.16
Consensus MFE	-7.81
Energy contribution	-8.53
Covariance contribution	0.72
Combinations/Pair	1.20
Mean z-score	-2.18
Structure conservation index	0.46
SVM decision value	0.30
SVM RNA-class probability	0.677112
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10963139 92 + 22407834
CUGUGGAAAGUUUAUUUAUUGACGGAACAACUUUGACCUUUCCGCAUCACCUC-AUUAACUUUUUUGUGGUUUAGUGAAUUAAUUACCUUUCC
.(((((((((.(((....(((......)))...))).))))))))).....((-(((((((.......)).)))))))............... ( -16.80)
>DroSec_CAF1 45907 92 + 1
CUGUGGAAAGUUCAUUUAUUGACUGAACAACUUUGACCUUUCCGCAUCACCUC-AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCU
.(((((((((.(((....(((......)))...))).)))))))))((((...-((((((.....))))))...))))............... ( -21.80)
>DroSim_CAF1 52830 78 + 1
CUGUGGAAAGUUCAUUUAUUG--------------ACCUUUUCGCAUCACCUU-AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCC
.(((((((((.(((.....))--------------).)))))))))((((...-((((((.....))))))...))))............... ( -19.80)
>DroEre_CAF1 46502 91 + 1
CUGUGGAAAGUUUAUUUAUUGACUAA-AAACUUUCACCUUUCCACAUCAUCCC-AUUACAUUUUUAGCGGUUUACGGAAUUAAUUACCGUCCU
.(((((((((................-..........))))))))).......-............(((((..............)))))... ( -13.91)
>DroYak_CAF1 48126 93 + 1
CUGUGGAAUGUUCAAUUAUUGACUACACAACUUUGACCUUUCAAAAGCAUCCCAAUUGCAUUUUUUGCGGUUUACGGAAUUAAUUACCGUCCU
((((((.(((((......(((......))).(((((....)))))))))).))(((((((.....))))))).))))................ ( -13.50)
>consensus
CUGUGGAAAGUUCAUUUAUUGACUAAACAACUUUGACCUUUCCGCAUCACCUC_AUUACAUUUUUUGUGGUUUAGUGAAUUAAUUACCUUCCU
.(((((((((.(((...................))).)))))))))......................(((..............)))..... ( -7.81 =  -8.53 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006