Locus 3763

Sequence ID 2L_DroMel_CAF1
Location 10,962,753 – 10,962,853
Length 100
Max. P 0.820702
window5924

overview

Window 4

Location 10,962,753 – 10,962,853
Length 100
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.74
Mean single sequence MFE -25.26
Consensus MFE -14.57
Energy contribution -14.80
Covariance contribution 0.23
Combinations/Pair 1.22
Mean z-score -2.38
Structure conservation index 0.58
SVM decision value 0.68
SVM RNA-class probability 0.820702
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10962753 100 - 22407834
GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGUAUUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUAGGGAAU
....((((-((((.....)))))))).(((((((..(((.........)))..)))))))............((((((.(((...-..)))..))))))... ( -26.10)
>DroSec_CAF1 45552 100 - 1
GCAUGCGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU
....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -28.40)
>DroSim_CAF1 52503 100 - 1
GCAUGCGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU
....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -28.40)
>DroEre_CAF1 46102 83 - 1
GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAGGUAGACGAGCUUGUCUCUCGUUAAUCUUAUAACCUUAUAAAGAA------------------
....((((-((((.....)))))))).(((((..((.(((((.((((((.......)))))).)))))))..))))).......------------------ ( -26.60)
>DroYak_CAF1 47706 100 - 1
GCAUGUGG-CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU-GGCUUGAAUGGGGAAU
....((((-((((.....)))))))).(((((((....((((......)))).)))))))............((((((.(((...-..)))..))))))... ( -26.50)
>DroMoj_CAF1 164775 87 - 1
GCGGGCAGCAAUUAAUUAGACGCCGCUAAAAACAAUAACAAAAGAUGAGCUUGUCGCUCAUUAAUCUUAUGACCUCAUAAACACCAC---------------
((((..................)))).................(((((((.....)))))))....(((((....))))).......--------------- ( -15.57)
>consensus
GCAUGCGG_CAUUAAUUAAGUGCCGCUUGAGGGAAUAGAAGUAGAUGAGCUUGUCUCUCAUUAAUCUUAUAACCUUAUAAAGAAU_GGCUUGAAUGGGGAAU
....((((.((((.....)))))))).(((((..((((.....((((((.......))))))....))))..)))))......................... (-14.57 = -14.80 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:27 2006