| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 10,941,114 – 10,941,222 |
| Length | 108 |
| Max. P | 0.716215 |
| Location | 10,941,114 – 10,941,222 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 79.76 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -13.11 |
| Energy contribution | -16.03 |
| Covariance contribution | 2.92 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.44 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 10941114 108 + 22407834 UUAAAAUGUCAGAGCUGAAAACU---------CUGCCAGCC--UGCAGUUGAAAGUGUAAUUUUUGCGGGUUGAAGGAGCUUAGUUUUCUCAACUGACAGCAUUGCAUUUUAUUUAAAU .(((((((.(((.((((....((---------((..(((((--(((((...............))))))))))..)))).((((((.....)))))))))).))))))))))....... ( -34.36) >DroSec_CAF1 33686 108 + 1 UCAAAAUGUCAGAGCUGAAAACU---------CUGCCAGUC--UGCAGUUGAAAGUGUAAAAUUUGCGGGUUGAAGGAGCUUAGUUUUCUCAACUGACAGCAUUGCAUUUUAUUUAAAU ..((((((.(((.((((....((---------((..((..(--(((((...............))))))..))..)))).((((((.....)))))))))).)))))))))........ ( -28.96) >DroSim_CAF1 34712 108 + 1 UUAAAAUGUCAGAGCUGAAAACU---------CUGCCAGCC--UGCAGUUGAAAGUGUAAUAUUUGCGGGUUGAAGGAGCUUAGUUUUCUCAACUGACAGCAUUGCAUUUUAUUUAAAU .(((((((.(((.((((....((---------((..(((((--(((((...............))))))))))..)))).((((((.....)))))))))).))))))))))....... ( -34.36) >DroEre_CAF1 33881 108 + 1 UUAAAAUGUCAGAGCUGAAAACU---------CUGCCGGGC--UGCAGUUGAAAGUGUAAUUUUUGUGGCUUGAAGGCGCUUAGUUUGCUCAACUGACAGCGUUGCAUUUCAUUUAAAU ...(((((..((((.(....)))---------))((.(.((--(((((((((....((((.((..(((.(.....).)))..)).))))))))))).)))).).))....))))).... ( -29.40) >DroYak_CAF1 34717 117 + 1 UUAAAAUGUCAGAGCUGAAAACUGCAGACCAACUGCCAGGC--UGCAGUUGAAAGUGCAAUUUUUGUGGGUUGAAGAAGCUUAGUUUUCUCAACUGACAGCGUUGUAUUUUAUUUAAAU ........(((....))).((((((((.((........)))--))))))).((((((((((..((((.((((((..((((...))))..)))))).)))).))))))))))........ ( -36.90) >DroAna_CAF1 39247 88 + 1 UUAAAAUGUCAAAAUUGCAAAGU---------CUGCGAAUCAUUGGGGCUAAAAGUGUAAUUGUUGUU--------------A--UUGCUCAGCUCUAAG------AAUUUAUUUAAAU (((((.........(((((....---------.))))).((.((((((((...((((((((....)))--------------)--.)))).)))))))))------).....))))).. ( -15.00) >consensus UUAAAAUGUCAGAGCUGAAAACU_________CUGCCAGCC__UGCAGUUGAAAGUGUAAUUUUUGCGGGUUGAAGGAGCUUAGUUUUCUCAACUGACAGCAUUGCAUUUUAUUUAAAU .(((((((.(((.((((...............((((........))))....................((((((..((((...))))..))))))..)))).))))))))))....... (-13.11 = -16.03 + 2.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:21 2006