Locus 3758

Sequence ID 2L_DroMel_CAF1
Location 10,922,259 – 10,922,371
Length 112
Max. P 0.535410
window5916

overview

Window 6

Location 10,922,259 – 10,922,371
Length 112
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 80.47
Mean single sequence MFE -25.42
Consensus MFE -16.55
Energy contribution -17.72
Covariance contribution 1.17
Combinations/Pair 1.00
Mean z-score -1.37
Structure conservation index 0.65
SVM decision value 0.00
SVM RNA-class probability 0.535410
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10922259 112 + 22407834
UGUGUAUUACAAACAGGCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACAAACCGAACUUUCCGGAGAUGCG-GC----
(((.((((....(((.((.((((.((((((((....)))))))).))))...((((((....))))))-.)).))).....)))).)))..(((..(((....)))...))-).---- ( -26.60)
>DroPse_CAF1 36256 110 + 1
UGUGCAUUACA-ACAGCAGGCAUAUGAAUUUAGUAUUGAAUUUAAAUUCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACACGGCGCCCCGUAAGCCGAUGGU-G-----
..(((......-...))).(((..(((((((((........)))))))))...))).(((((((((..-.)))))))))........((((((.........)))).))..-.----- ( -26.70)
>DroEre_CAF1 15643 116 + 1
UGUGUAUAACAAACAGGCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACAAACCGAACUUUCCACUGACGGG-GGCGUU
(((.(((.....(((.((.((((.((((((((....)))))))).))))...((((((....))))))-.)).)))......))).))).....((((..((......)).-.).))) ( -25.90)
>DroWil_CAF1 4865 97 + 1
UGUGUAUUAC----AGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAAAAACGUGUAGAAAAAUAGACAAGCCAAGU-GUCG----------------
(((.((((..----.....((((.((((((((....)))))))).))))........((((((((......))))))))..)))).)))........-....---------------- ( -19.20)
>DroAna_CAF1 16076 109 + 1
UGUGUAUUACA-ACAGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA-AACGUGUAGAAAAAUAGACAAGCCGUA------GGGGUUGU-UGCAGAA
.........((-((((((.((((.((((((((....)))))))).))))...(((((((((((((...-..)))))))).............))))------).))))))-))..... ( -27.41)
>DroPer_CAF1 37183 110 + 1
UGUGCAUUACA-ACAGCAGGCAUAUGAAUUUAGUAUUGAAUUUAAAUUCAAAUUGCGUUUGCAUGCAA-AGCGUGUAGAAAAAUAGACACGGCGCCCCGUAAGCCGAUGGU-G-----
..(((......-...))).(((..(((((((((........)))))))))...))).(((((((((..-.)))))))))........((((((.........)))).))..-.----- ( -26.70)
>consensus
UGUGUAUUACA_ACAGCCAGCAUAUGAAUUUAGUAUUGAAUUUAAAUGCAAAUUGCGUUUGCAUGCAA_AGCGUGUAGAAAAAUAGACAAGCCGAAC_GUCAGCCGAUGG__G_____
(((.((((...........((((.((((((((....)))))))).))))........(((((((((....)))))))))..)))).)))............................. (-16.55 = -17.72 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006