Locus 3755

Sequence ID 2L_DroMel_CAF1
Location 10,906,014 – 10,906,112
Length 98
Max. P 0.610904
window5912

overview

Window 2

Location 10,906,014 – 10,906,112
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 85.87
Mean single sequence MFE -23.88
Consensus MFE -18.28
Energy contribution -18.37
Covariance contribution 0.09
Combinations/Pair 1.08
Mean z-score -2.24
Structure conservation index 0.77
SVM decision value 0.16
SVM RNA-class probability 0.610904
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 10906014 98 - 22407834
UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACGCAU---------
.......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40)
>DroSec_CAF1 47790 98 - 1
UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU---------
.......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40)
>DroSim_CAF1 47162 98 - 1
UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU---------
.......((((...((((...((.((((.(((....))).)))).))..........(((((......)))))))))..))))...............--------- ( -23.40)
>DroEre_CAF1 46030 98 - 1
UUCACAGCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCGUGCGCAUCUACAUACACAU---------
......((((.(..((((...((.((((.(((....))).)))).))..........(((((......)))))))))..)))))..............--------- ( -26.10)
>DroYak_CAF1 47001 106 - 1
UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACC-UGCGCAUCUGCAUACAUAUGUAUGUACC
........((.(((((((...((.((((.(((....))).)))).))..........(((((......)))))))).)-)))))...(((((((....))))))).. ( -29.20)
>DroAna_CAF1 50361 86 - 1
UUCACAUAGCUCUAAUCCAAACAUUGCCCACACAAGUGUCGGAACUAAAUUAUUCAUUUGUUAAUUUAGACAUGGAAAACGGGCGU---------------------
........((((...((((.......((.(((....))).))..((((((((.........))))))))...))))....))))..--------------------- ( -17.80)
>consensus
UUCACAUCGCUGUAGUCCAAACAUUGCCCACACAAGUGUUGGCACUGAAUAAUUUAUUUGUUAAUUUAGACGAGGACCAGGCGCAUCUACAUACAUAU_________
........((.((.((((......((((.(((....))).))))(((((((((......))).))))))....))))...))))....................... (-18.28 = -18.37 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006